Annotations: 5ZHX

Crystal structure of SmgGDS-558 and farnesylated RhoA complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth h]	SCOP2B Superfamily	Ras-like P-loop GTPases	8057414	3002022	SCOP2B (2022-06-29)
G [auth g]	SCOP2B Superfamily	Ras-like P-loop GTPases	8057414	3002022	SCOP2B (2022-06-29)
F [auth f]	SCOP2B Superfamily	Ras-like P-loop GTPases	8057414	3002022	SCOP2B (2022-06-29)
E [auth e]	SCOP2B Superfamily	Ras-like P-loop GTPases	8057414	3002022	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth h]	Collar,S_tail_recep_bd	e5zhxh1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295)
G [auth g]	Collar,S_tail_recep_bd	e5zhxg1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295)
F [auth f]		e5zhxf1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F:	ECOD (v295)
E [auth e]		e5zhxe1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F:	ECOD (v295)
D	Collar,S_tail_recep_bd	e5zhxD1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295)
C	Collar,S_tail_recep_bd	e5zhxC1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295)
B	Collar,S_tail_recep_bd	e5zhxB1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295)
A		e5zhxA1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F:	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth h]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
G [auth g]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
F [auth f]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
E [auth e]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00514	Armadillo/beta-catenin-like repeat (Arm)	Armadillo/beta-catenin-like repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth e], F [auth f], G [auth g], H [auth h]	Transforming protein RhoA	pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein binding kinase binding enzyme binding protein kinase binding cytoskeletal protein binding myosin binding G protein activity molecular function regulator activity	regulation of cellular process regulation of cellular component organization cell-substrate junction assembly cellular component organization cellular component biogenesis cell adhesion cellular component assembly cell junction assembly regulation of cell-substrate junction organization cellular component organization or biogenesis focal adhesion assembly regulation of biological process regulation of cell-substrate adhesion regulation of cell adhesion regulation of cellular process regulation of cellular component organization cell-substrate junction assembly cellular component organization cellular component biogenesis cell adhesion cellular component assembly cell junction assembly regulation of cell-substrate junction organization cellular component organization or biogenesis focal adhesion assembly regulation of biological process regulation of cell-substrate adhesion regulation of cell adhesion biological regulation cell-substrate adhesion regulation of cellular component biogenesis regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization cellular process regulation of focal adhesion assembly regulation of cell-substrate junction assembly membrane organization cytoskeleton-dependent cytokinesis cytokinesis cleavage furrow formation cytokinetic process membrane invagination cell cycle cell division plasma membrane invagination cell cycle process regulation of cytokinesis positive regulation of cell division regulation of cell cycle process positive regulation of biological process positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process regulation of cell cycle positive regulation of cellular process cell population proliferation regulation of cell population proliferation regulation of osteoblast proliferation osteoblast proliferation developmental process multicellular organismal process cellular developmental process hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation beta selection leukocyte activation alpha-beta T cell differentiation T cell activation immune system process cell differentiation anatomical structure development alpha-beta T cell activation T cell differentiation T cell selection leukocyte differentiation response to peptide response to stimulus response to chemical response to chemokine response to cytokine cellular response to cytokine stimulus cellular response to chemokine endothelial cell migration cell migration cell motility substrate adhesion-dependent cell spreading actomyosin structure organization actin cytoskeleton organization actin filament organization organelle organization actin filament bundle organization contractile actin filament bundle assembly actin filament-based process actin filament bundle assembly stress fiber assembly supramolecular fiber organization cytoskeleton organization apical junction assembly cell-cell junction assembly cell-cell junction organization regulation of cell motility regulation of locomotion regulation of cell migration locomotion cellular response to stimulus cell surface receptor signaling pathway signaling Wnt signaling pathway, planar cell polarity pathway cell communication non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway chemotaxis negative chemotaxis taxis response to external stimulus anatomical structure morphogenesis odontogenesis animal organ development animal organ morphogenesis animal gross anatomical part developmental process positive regulation of locomotion regulation of lymphocyte migration positive regulation of cell migration positive regulation of cell motility positive regulation of mononuclear cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process positive regulation of lymphocyte migration regulation of leukocyte migration positive regulation of T cell migration lymphocyte migration positive regulation of leukocyte migration leukocyte migration regulation of T cell migration mononuclear cell migration T cell migration negative regulation of locomotion cell migration involved in sprouting angiogenesis regulation of blood vessel endothelial cell migration negative regulation of biological process angiogenesis negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration multicellular organism development tube morphogenesis negative regulation of cellular process regulation of endothelial cell migration blood vessel endothelial cell migration negative regulation of cell migration blood vessel development system development blood vessel morphogenesis tube development regulation of cell migration involved in sprouting angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure formation involved in morphogenesis negative regulation of cell motility negative regulation of cell migration involved in sprouting angiogenesis regulation of protein modification process positive regulation of phosphorylation regulation of catalytic activity regulation of protein phosphorylation positive regulation of protein metabolic process regulation of transferase activity positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of metabolic process positive regulation of molecular function positive regulation of protein modification process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein kinase activity protein modification process positive regulation of protein phosphorylation protein phosphorylation phosphorylation regulation of protein metabolic process positive regulation of catalytic activity primary metabolic process regulation of protein kinase activity regulation of macromolecule metabolic process regulation of molecular function positive regulation of kinase activity regulation of kinase activity macromolecule modification regulation of protein serine/threonine kinase activity regulation of phosphorylation metabolic process macromolecule metabolic process regulation of metabolic process small GTPase-mediated signal transduction Rho protein signal transduction intracellular signal transduction intracellular signaling cassette heart development heart valve development aortic valve development heart valve morphogenesis aortic valve formation semi-lunar valve development aortic valve morphogenesis heart valve formation epithelium development endothelium development morphogenesis of an endothelium endothelial tube lumen extension endothelial tube morphogenesis morphogenesis of an epithelium tissue development tissue morphogenesis epithelial tube morphogenesis regulation of leukocyte differentiation regulation of leukocyte activation regulation of alpha-beta T cell activation regulation of cell activation regulation of cell differentiation positive regulation of T cell differentiation regulation of cell development positive regulation of developmental process positive regulation of cell activation positive regulation of leukocyte activation positive regulation of T cell activation positive regulation of cell development positive regulation of alpha-beta T cell activation regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process positive regulation of alpha-beta T cell differentiation regulation of developmental process positive regulation of leukocyte cell-cell adhesion regulation of alpha-beta T cell differentiation leukocyte cell-cell adhesion positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation cell-cell adhesion positive regulation of hemopoiesis positive regulation of cell differentiation regulation of multicellular organismal process regulation of cell-cell adhesion regulation of lymphocyte differentiation regulation of multicellular organismal development positive regulation of cell adhesion regulation of T cell activation regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation regulation of modification of synaptic structure regulation of synapse organization regulation of synapse structure or activity regulation of modification of postsynaptic structure synapse organization regulation of biological quality modification of synaptic structure modification of postsynaptic structure alpha-beta T cell lineage commitment T cell lineage commitment cell fate commitment positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling skeletal muscle satellite cell migration apolipoprotein A-I-mediated signaling pathway reactive oxygen species biosynthetic process regulation of biosynthetic process negative regulation of metabolic process reactive oxygen species metabolic process regulation of reactive oxygen species biosynthetic process negative regulation of reactive oxygen species metabolic process biosynthetic process negative regulation of reactive oxygen species biosynthetic process negative regulation of biosynthetic process regulation of reactive oxygen species metabolic process regulation of cytoskeleton organization regulation of actin filament-based process regulation of organelle organization regulation of actin cytoskeleton organization bone trabecula morphogenesis trabecula morphogenesis positive regulation of hydrolase activity regulation of hydrolase activity positive regulation of lipase activity biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds negative regulation of cellular respiration regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of cellular respiration regulation of aerobic respiration regulation of oxidative phosphorylation negative regulation of oxidative phosphorylation polarized epithelial cell differentiation establishment of monopolar cell polarity establishment or maintenance of monopolar cell polarity establishment or maintenance of cell polarity epithelial cell differentiation morphogenesis of a polarized epithelium establishment or maintenance of apical/basal cell polarity establishment or maintenance of bipolar cell polarity establishment of epithelial cell apical/basal polarity establishment of cell polarity establishment or maintenance of epithelial cell apical/basal polarity establishment of apical/basal cell polarity establishment of epithelial cell polarity microtubule cytoskeleton organization regulation of microtubule-based process microtubule-based process regulation of microtubule cytoskeleton organization mitotic cytokinetic process mitotic cytokinesis mitotic cell cycle mitotic cell cycle process mitotic cleavage furrow formation cytoplasmic microtubule organization positive regulation of neuron differentiation neurogenesis neuron differentiation nervous system development generation of neurons regulation of neuron differentiation semaphorin-plexin signaling pathway bone maturation developmental maturation skeletal system development ossification anatomical structure maturation ossification involved in bone maturation animal organ maturation bone development head development brain development substantia nigra development central nervous system development midbrain development neural nucleus development negative regulation of cell adhesion negative regulation of cell-substrate adhesion regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction positive regulation of non-canonical NF-kappaB signal transduction membraneless organelle assembly mitotic sister chromatid segregation chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly nuclear division nuclear chromosome segregation Roundabout signaling pathway regulation of modification of postsynaptic actin cytoskeleton modification of postsynaptic actin cytoskeleton wound healing epiboly involved in wound healing morphogenesis of an epithelial sheet response to stress epiboly wound healing, spreading of cells response to wounding positive regulation of organelle organization positive regulation of cellular component organization regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly positive regulation of stress fiber assembly regulation of actin filament organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization regulation of stress fiber assembly regulation of actomyosin structure organization regulation of supramolecular fiber organization negative regulation of cell size regulation of cellular component size regulation of cell size regulation of anatomical structure size positive regulation of leukocyte adhesion to vascular endothelial cell regulation of leukocyte adhesion to vascular endothelial cell leukocyte adhesion to vascular endothelial cell	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol synapse cell junction glutamatergic synapse apical junction complex cell-cell junction anchoring junction intracellular organelle cytoskeleton membraneless organelle intracellular membraneless organelle neuron spine neuron projection dendritic spine somatodendritic compartment postsynapse dendrite dendritic tree midbody focal adhesion cell-substrate junction cell periphery cell cortex ruffle plasma membrane membrane leading edge membrane ruffle membrane plasma membrane region cell projection membrane cell division site cleavage furrow organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle secretory granule secretory vesicle secretory granule membrane endosome ficolin-1-rich granule membrane ficolin-1-rich granule tertiary granule cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane nucleus
A, B, C, D	Rap1 GTPase-GDP dissociation stimulator 1	GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	regulation of tube diameter vascular associated smooth muscle contraction multicellular organismal process system process regulation of tube size biological regulation muscle contraction muscle system process circulatory system process smooth muscle contraction vascular process in circulatory system blood vessel diameter maintenance regulation of biological quality vasoconstriction regulation of tube diameter vascular associated smooth muscle contraction multicellular organismal process system process regulation of tube size biological regulation muscle contraction muscle system process circulatory system process smooth muscle contraction vascular process in circulatory system blood vessel diameter maintenance regulation of biological quality vasoconstriction blood circulation regulation of anatomical structure size regulation of biological process regulation of cellular component organization regulation of cellular process regulation of organelle organization cellular component organization organelle organization regulation of mitochondrion organization cellular process cellular component organization or biogenesis mitochondrion organization inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis negative regulation of endoplasmic reticulum calcium ion concentration monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis actin cytoskeleton organization protein-containing complex organization myosin filament assembly myosin filament organization cellular component biogenesis cellular component assembly protein-containing complex assembly actin filament-based process supramolecular fiber organization cytoskeleton organization biosynthetic process CAAX-box protein maturation metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation mitochondrial calcium ion homeostasis positive regulation of mitochondrial calcium ion concentration localization protein localization to organelle macromolecule localization protein localization to nucleus intracellular protein localization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytosol nucleus endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth e], F [auth f], G [auth g], H [auth h]	IPR003578	Small GTPase Rho	Family
E [auth e], F [auth f], G [auth g], H [auth h]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth e], F [auth f], G [auth g], H [auth h]	IPR005225	Small GTP-binding domain	Domain
E [auth e], F [auth f], G [auth g], H [auth h]	IPR001806	Small GTPase	Family
A, B, C, D	IPR040144	Rap1 GTPase-GDP dissociation stimulator 1	Family
A, B, C, D	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B, C, D	IPR000225	Armadillo	Repeat
A, B, C, D	IPR011989	Armadillo-like helical	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth e], F [auth f], G [auth g], H [auth h]	: P61586	mature T-cell and NK-cell non-Hodgkin lymphoma carcinoma primary cutaneous T-cell non-Hodgkin lymphoma sarcomatoid carcinoma proteinuria T-cell non-Hodgkin lymphoma urinary bladder cancer Neoplasm Invasiveness angioimmunoblastic T-cell lymphoma cancer heart disease IgA glomerulonephritis osteoporosis breast disease pancreatic ductal adenocarcinoma mature T-cell and NK-cell non-Hodgkin lymphoma carcinoma primary cutaneous T-cell non-Hodgkin lymphoma sarcomatoid carcinoma proteinuria T-cell non-Hodgkin lymphoma urinary bladder cancer Neoplasm Invasiveness angioimmunoblastic T-cell lymphoma cancer heart disease IgA glomerulonephritis osteoporosis breast disease pancreatic ductal adenocarcinoma undifferentiated carcinoma exocrine pancreatic carcinoma gastrointestinal stromal tumor hereditary diffuse gastric adenocarcinoma lung carcinoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm myopathy osteosarcoma Burkitt lymphoma endogenous depression gastric cancer granulomatous slack skin disease lymphoma malignant ependymoma MALT lymphoma ovarian cancer plasma cell myeloma congenital diaphragmatic hernia rheumatoid arthritis diabetes mellitus toxic or drug-related embryofetopathy endometriosis urinary bladder neoplasm gastric neoplasm
A, B, C, D	: P52306	astrocytic tumor lung cancer medulloblastoma pilocytic astrocytoma tuberculosis atypical teratoid rhabdoid tumor malignant ependymoma oligodendroglioma primitive neuroectodermal tumor glioblastoma malignant glioma ovarian cancer subependymal giant cell astrocytoma

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.