5L2K
Crystal structure of GEM42 TCR-CD1b-GMM complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054661 | 3000071 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MHC antigen-recognition domain | 8042144 | 3000521 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8003766 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C1-set_2 | e5l2kA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
A | MHC_I | e5l2kA2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_I | ECOD (1.6) |
B | C1-set_2 | e5l2kB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
C [auth D] | DUF1968 | e5l2kD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1968 | ECOD (1.6) |
C [auth D] | V-set_3 | e5l2kD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
D [auth E] | C1-set | e5l2kE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
D [auth E] | V-set_5 | e5l2kE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_5 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
MR1 | I-ALPHA-LIKE | Homo sapiens (human) | CD1B*01 | G-LIKE-DOMAIN G-ALPHA1-LIKE, G-LIKE-DOMAIN G-ALPHA2-LIKE, C-LIKE-DOMAIN C-LIKE | RPI-MH1Like | MH1LIKE-ALPHA-LIKE_B2M | IMGT (202442-0) | |
MR1 | B2M | Homo sapiens (human) | B2M*01, B2M*02 | C-LIKE-DOMAIN C-LIKE | RPI-MH1Like | MH1LIKE-ALPHA-LIKE_B2M | IMGT (202442-0) | |
C [auth D] | GEM42 TCR | TR-ALPHA | Homo sapiens (human) | TRAV1-2*01, TRAJ9*01, TRAC*01 | V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA | TR | TR-ALPHA_BETA-2 | IMGT (202442-0) |
D [auth E] | GEM42 TCR | TR-BETA-2 | Homo sapiens (human) | TRBV6-2*01, TRBV6-3*01, TRBJ2-1*01, TRBC2*01, TRBC2*02 | V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 | TR | TR-ALPHA_BETA-2 | IMGT (202442-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR050208 | Antigen-presenting and immune regulatory MHC class I-related | Family | |
IPR003597 | Immunoglobulin C1-set | Domain | |
IPR011161 | MHC class I-like antigen recognition-like | Domain | |
IPR011162 | MHC classes I/II-like antigen recognition protein | Homologous Superfamily | |
IPR037055 | MHC class I-like antigen recognition-like superfamily | Homologous Superfamily | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR007110 | Immunoglobulin-like domain | Domain | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR007110 | Immunoglobulin-like domain | Domain | |
IPR050160 | Major Histocompatibility Complex/Immunoglobulin | Family | |
IPR003597 | Immunoglobulin C1-set | Domain | |
IPR015707 | Beta-2-Microglobulin | Family |