Annotations: 6B55

Crystal structure of the Plant Defensin NaD1 complexed with phosphatidic acid

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
T	d6b55t_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
S	d6b55s_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
R	d6b55r_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
Q	d6b55q_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
P	d6b55p_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
O	d6b55o_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
N	d6b55n_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
M	d6b55m_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
L	d6b55l_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
K	d6b55k_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
J	d6b55j_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
I	d6b55i_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
H	d6b55h_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
G	d6b55g_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
F	d6b55f_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
E	d6b55e_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
D	d6b55d_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
C	d6b55c_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
B	d6b55b_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)
A	d6b55a_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Scorpion toxin-like	Plant defensins	automated matches	(Nicotiana alata ) [TaxId: 4087 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Scorpion toxin-like	8078335	3000309	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	DEAD	e6b55T1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
S	DEAD	e6b55S1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
R	DEAD	e6b55R1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
Q	DEAD	e6b55Q1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
P	DEAD	e6b55P1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
O	DEAD	e6b55O1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
N	DEAD	e6b55N1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
M	DEAD	e6b55M1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
L	DEAD	e6b55L1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
K	DEAD	e6b55K1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
J	DEAD	e6b55J1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
I	DEAD	e6b55I1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
H	DEAD	e6b55H1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
G	DEAD	e6b55G1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
F	DEAD	e6b55F1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
E	DEAD	e6b55E1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
D	DEAD	e6b55D1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
C	DEAD	e6b55C1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
B	DEAD	e6b55B1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: DEAD	ECOD (v295.2)
A	Complex1_49kDa	e6b55A1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: Complex1_49kDa	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
S	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
R	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
Q	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
P	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
O	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
N	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
M	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
L	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
K	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
J	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
I	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
H	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
G	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
F	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
E	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
D	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
C	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
B	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)
A	3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	Flower-specific defensin	-	response to stimulus defense response response to stress	cellular anatomical structure extracellular region membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle vacuole cytoplasm intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR036574	Knottin, scorpion toxin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR003614	Knottins-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR008176	Defensin, plant	Family

6B55 | pdb_00006b55

Crystal structure of the Plant Defensin NaD1 complexed with phosphatidic acid

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage