6BYS | pdb_00006bys

Structures of the PKA RI alpha holoenzyme with the FLHCC driver J-PKAc alpha or native PRKAc alpha


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilycAMP-binding domain-like 8036784 3000084 SCOP2B (2022-06-29)
HSCOP2B SuperfamilycAMP-binding domain-like 8036785 3000084 SCOP2B (2022-06-29)
FSCOP2B SuperfamilycAMP-binding domain-like 8036785 3000084 SCOP2B (2022-06-29)
FSCOP2B SuperfamilycAMP-binding domain-like 8036784 3000084 SCOP2B (2022-06-29)
DSCOP2B SuperfamilycAMP-binding domain-like 8036784 3000084 SCOP2B (2022-06-29)
DSCOP2B SuperfamilycAMP-binding domain-like 8036785 3000084 SCOP2B (2022-06-29)
BSCOP2B SuperfamilycAMP-binding domain-like 8036784 3000084 SCOP2B (2022-06-29)
BSCOP2B SuperfamilycAMP-binding domain-like 8036785 3000084 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyProtein kinase-like (PK-like) 8069143 3000066 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyProtein kinase-like (PK-like) 8069143 3000066 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyProtein kinase-like (PK-like) 8069143 3000066 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8069143 3000066 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
He6bysH1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
Fe6bysF1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
De6bysD1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
Be6bysB1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
Ge6bysG1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
Ee6bysE1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
Ce6bysC1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)
Ae6bysA1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: Phage_base_VF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H
PF00027Cyclic nucleotide-binding domain (cNMP_binding)Cyclic nucleotide-binding domainThis domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Domain
A, C, E, G
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F, H
cAMP-dependent protein kinase type I-alpha regulatory subunit
A, C, E, G
cAMP-dependent protein kinase catalytic subunit alpha

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, C, E, G
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046
A, C, E, G
TPO Parent Component: THR

RESIDAA0037 , AA0038

PSI-MOD :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047