6CI7 | pdb_00006ci7

The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FV-sete6ci7F1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (develop294)
EV-sete6ci7E1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (develop294)
DV-sete6ci7D1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (develop294)
CV-sete6ci7C1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (develop294)
BV-sete6ci7B1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (develop294)
AYcaOe6ci7A1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: YcaOECOD (develop294)
ACBAHe6ci7A2 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CBAHECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
E3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
D3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
C3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
B3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
A3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02624YcaO cyclodehydratase, ATP-ad Mg2+-binding (YcaO)YcaO cyclodehydratase, ATP-ad Mg2+-binding- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
YcaO - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003776YcaO-like domainDomain
A, B, C, D, E
IPR017667MTH_987/MJ1094Family