6D96 | pdb_00006d96

Structure of influenza neuraminidase from strain A/BrevigMission/1/1918(H1N1) expressed in HEK-293E cells

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6d96h_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
G	d6d96g_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
F	d6d96f_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
E	d6d96e_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
D	d6d96d_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
C	d6d96c_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
B	d6d96b_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)
A	d6d96a_	All beta proteins	6-bladed beta-propeller	Sialidases	automated matches	automated matches	Influenza A virus (strain A/South Carolina/1/1918 H1N1) (Influenza A virus (A/Brevig Mission/1/1918(H1N1)) ) [TaxId: 88776 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sialidases	8071694	3001607	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	cNMP_binding	e6d96H1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
G	cNMP_binding	e6d96G1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
F	cNMP_binding	e6d96F1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
E	cNMP_binding	e6d96E1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
D	cNMP_binding	e6d96D1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
C	cNMP_binding	e6d96C1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
B	cNMP_binding	e6d96B1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)
A	cNMP_binding	e6d96A1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: cNMP_binding	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
G	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
F	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
E	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
D	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
C	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
B	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
A	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Neuraminidase	cation binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on glycosyl bonds alpha-sialidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity exo-alpha-sialidase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral process viral budding from plasma membrane carbohydrate metabolic process primary metabolic process metabolic process cellular process biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral process viral budding from plasma membrane viral release from host cell	cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part virion component virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001860	Glycoside hydrolase, family 34	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR033654	Sialidase, Influenza viruses A/B	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036278	Sialidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.