6DLD | pdb_00006dld

Crystal structure of IgLON5/NEGR1 heterodimer

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PRK	e6dldD1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: PRK	ECOD (develop294)
B	PDEase_I	e6dldB1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: PDEase_I	ECOD (develop294)
C	PDEase_I	e6dldC1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: PDEase_I	ECOD (develop294)
A	Ig_3	e6dldA1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Ig_3	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF13927	Immunoglobulin domain (Ig_3)	Immunoglobulin domain	This family contains immunoglobulin-like domains.	Domain
B, D	PF07679	Immunoglobulin I-set domain (I-set)	Immunoglobulin I-set domain		Domain
A, C	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
A, C	PF13927	Immunoglobulin domain (Ig_3)	Immunoglobulin domain	This family contains immunoglobulin-like domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Neuronal growth regulator 1	protein binding binding transmembrane transporter binding	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development behavior locomotory behavior cellular response to stimulus positive regulation of cell communication developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development behavior locomotory behavior cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction regulation of response to stimulus calcium-mediated signaling regulation of cell communication cellular process positive regulation of signaling cellular developmental process regulation of developmental process negative regulation of biological process cell development regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis negative regulation of glial cell proliferation regulation of cell development regulation of nervous system development neurogenesis negative regulation of neurogenesis regulation of glial cell proliferation gliogenesis cell differentiation negative regulation of cellular process regulation of multicellular organismal process negative regulation of nervous system development negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of cell population proliferation cell population proliferation negative regulation of developmental process negative regulation of gliogenesis negative regulation of cell development regulation of cell population proliferation glial cell proliferation negative regulation of multicellular organismal process regulation of cellular component organization cellular component organization cellular component biogenesis cellular component assembly negative regulation of cell junction assembly cell junction assembly regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality regulation of synapse assembly negative regulation of cellular component organization negative regulation of synapse organization regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly negative regulation of synapse assembly sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis plasma membrane bounded cell projection organization generation of neurons anatomical structure morphogenesis neuron development feeding behavior regulation of neuron projection development positive regulation of cellular component organization positive regulation of neuron projection development positive regulation of cell projection organization regulation of cell projection organization regulation of plasma membrane bounded cell projection organization muscle structure development skeletal muscle organ development muscle organ development regulation of protein stability fat cell differentiation biological process involved in intraspecies interaction between organisms social behavior establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization regulation of localization regulation of body fluid levels system process digestive system process regulation of system process saliva secretion positive regulation of secretion regulation of saliva secretion positive regulation of digestive system process secretion by tissue regulation of transport regulation of digestive system process regulation of secretion body fluid secretion digestion positive regulation of transport positive regulation of multicellular organismal process positive regulation of saliva secretion cell adhesion cell-cell adhesion protein localization to membrane raft cellular localization protein localization to cell periphery protein localization to plasma membrane raft localization within membrane protein localization to membrane organelle assembly lipid storage membraneless organelle assembly lipid droplet formation organelle organization lipid droplet organization nutrient storage	cell periphery cellular anatomical structure plasma membrane membrane side of membrane extracellular region somatodendritic compartment cell projection dendrite dendritic tree neuron projection dendritic shaft plasma membrane bounded cell projection neuron spine cell periphery cellular anatomical structure plasma membrane membrane side of membrane extracellular region somatodendritic compartment cell projection dendrite dendritic tree neuron projection dendritic shaft plasma membrane bounded cell projection neuron spine synapse dendritic spine postsynapse cell junction postsynaptic density neuron to neuron synapse postsynaptic specialization organelle asymmetric synapse cell body neuronal cell body membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle late endosome cytoplasm vesicle apical dendrite
A, C	IgLON family member 5	-	behavior multicellular organismal process motor behavior system process nervous system process neuromuscular process neuromuscular process controlling balance developmental process neuron recognition cellular developmental process cell development nervous system development generation of neurons neurogenesis behavior multicellular organismal process motor behavior system process nervous system process neuromuscular process neuromuscular process controlling balance developmental process neuron recognition cellular developmental process cell development nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development cell recognition cellular process system development	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B, D	IPR003598	Immunoglobulin subtype 2	Domain
B, D	IPR003599	Immunoglobulin domain subtype	Domain
B, D	IPR013098	Immunoglobulin I-set	Domain
B, D	IPR050876	IgLON domain-containing protein	Family
B, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, D	IPR007110	Immunoglobulin-like domain	Domain
A, C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C	IPR003598	Immunoglobulin subtype 2	Domain
A, C	IPR013106	Immunoglobulin V-set domain	Domain
A, C	IPR003599	Immunoglobulin domain subtype	Domain
A, C	IPR007110	Immunoglobulin-like domain	Domain
A, C	IPR050876	IgLON domain-containing protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: Q7Z3B1	obesity disorder malignant glioma pancreatic intraductal papillary-mucinous carcinoma Pick disease adenoma primitive neuroectodermal tumor astrocytic tumor atypical teratoid rhabdoid tumor cystic fibrosis endometriosis head and neck cancer lung adenocarcinoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm obesity disorder malignant glioma pancreatic intraductal papillary-mucinous carcinoma Pick disease adenoma primitive neuroectodermal tumor astrocytic tumor atypical teratoid rhabdoid tumor cystic fibrosis endometriosis head and neck cancer lung adenocarcinoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma adrenal cortex carcinoma psoriasis atopic eczema autism spectrum disorder ductal breast carcinoma in situ gastroesophageal reflux disease invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer allergic rhinitis attention deficit hyperactivity disorder, inattentive type bipolar disorder endogenous depression glioblastoma large cell medulloblastoma
A, C	Pharos: A6NGN9	diabetes mellitus malignant glioma glaucoma medulloblastoma malignant ependymoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.