6DLW | pdb_00006dlw

Complement component polyC9


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
USCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
USCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
USCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
USCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyEGF/Laminin-like 8052125 3000412 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTSP-1 type 1 repeat 8052127 3000814 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMAC/CDC-like 8052039 3002081 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLDL receptor-like module 8052141 3000728 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CAnoctamine6dlwC1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
GAnoctamine6dlwG1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
HAnoctamine6dlwH1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
IAnoctamine6dlwI1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
LAnoctamine6dlwL1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
TAnoctamine6dlwT1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
VAnoctamine6dlwV1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
UAnoctamine6dlwU1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
SAnoctamine6dlwS1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
RAnoctamine6dlwR1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
QAnoctamine6dlwQ1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
PAnoctamine6dlwP1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
OAnoctamine6dlwO1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
NAnoctamine6dlwN1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
MAnoctamine6dlwM1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
KAnoctamine6dlwK1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
JAnoctamine6dlwJ1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
FAnoctamine6dlwF1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
EAnoctamine6dlwE1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
DAnoctamine6dlwD1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
BAnoctamine6dlwB1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
ASBP_bac_1e6dlwA1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: SBP_bac_1ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00090Thrombospondin type 1 domain (TSP_1)Thrombospondin type 1 domainDomain
A, B, C, D, E
PF01823MAC/Perforin domain (MACPF)MAC/Perforin domainThe membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Fr ...The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (Pfam:PF01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold [1].
Domain
A, B, C, D, E
PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Complement component C9-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
A, B, C, D, E
IPR001862Membrane attack complex component/perforin/complement C9Family
A, B, C, D, E
IPR036055LDL receptor-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR020863Membrane attack complex component/perforin domain, conserved siteConserved Site
A, B, C, D, E
IPR000884Thrombospondin type-1 (TSP1) repeatRepeat
A, B, C, D, E
IPR020864Membrane attack complex component/perforin (MACPF) domainDomain
A, B, C, D, E
IPR036383Thrombospondin type-1 repeat superfamilyHomologous Superfamily
A, B, C, D, E
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMMonotopic/peripheralAll beta monotopic/peripheralMembrane attack complex superfamilyMembrane attack complex(MAC)/perforin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM