6EMW | pdb_00006emw

Structure of S.aureus ClpC in complex with MecA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2 FamilyExtended AAA-ATPase domain 8082858 4000283 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2 (2022-06-29)
OA [auth o]SCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyRecA-like P-loop NTPases 8082859 3002019 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
FA [auth f]SCOP2 FamilyAdapter protein MecA, substrate domain-like 8092886 4007784 SCOP2 (2022-06-29)
FA [auth f]SCOP2 SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2 (2022-06-29)
GA [auth g]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyAdapter protein MecA, substrate binding domain-like 8092887 3002638 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AActine6emwA1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
GActine6emwG1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
KA [auth k]Actine6emwk1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
MActine6emwM1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
YActine6emwY1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
SActine6emwS1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
BActine6emwB1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
LA [auth l]Actine6emwl1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
NActine6emwN1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
TActine6emwT1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
ZActine6emwZ1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
HActine6emwH1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
AA [auth a]Actine6emwa1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
CActine6emwC1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
IActine6emwI1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
MA [auth m]Actine6emwm1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
OActine6emwO1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
UActine6emwU1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
BA [auth b]Actine6emwb1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
DRibosomal_L22e6emwD1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ribosomal_L22ECOD (develop294)
JActine6emwJ1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
NA [auth n]Actine6emwn1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
PActine6emwP1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
VActine6emwV1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
EActine6emwE1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
OA [auth o]Actine6emwo1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
QActine6emwQ1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
WActine6emwW1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
KActine6emwK1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
CA [auth c]Actine6emwc1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
DA [auth d]Actine6emwd1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
FActine6emwF1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
PA [auth p]Actine6emwp1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
RActine6emwR1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
XActine6emwX1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
LActine6emwL1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
EA [auth e]Ribosomal_L22e6emwe1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ribosomal_L22ECOD (develop294)
FA [auth f]Actine6emwf1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
GA [auth g]Actine6emwg1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
IA [auth i]Actine6emwi1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
JA [auth j]Actine6emwj1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
HA [auth h]Actine6emwh1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10431C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)C-terminal, D2-small domain, of ClpB proteinThis is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ...This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly [1]. The domain is associated with two Clp_N, Pfam:PF02861, at the N-terminus as well as AAA, Pfam:PF00004 and AAA_2, Pfam:PF07724.
Domain
PF07724AAA domain (Cdc48 subfamily) (AAA_2)AAA domain (Cdc48 subfamily)This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. Domain
PF17871AAA lid domain (AAA_lid_9)AAA lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF17871AAA lid domain (AAA_lid_9)AAA lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent Clp protease ATP-binding subunit -
ATP-dependent Clp protease ATP-binding subunit -
Class III stress response-related ATPase, AAA+ superfamily -
ATP-dependent Clp protease ATP-binding subunit ClpC -
ATP-dependent Clp protease ATP-binding subunit ClpC
ATP-dependent Clp protease ATP-binding subunit ClpC
Adapter protein MecA - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001270ClpA/B familyFamily
IPR018368ClpA/B, conserved site 1Conserved Site
IPR041546ClpA/ClpB, AAA lid domainDomain
IPR004176Clp, repeat (R) N-terminal domainDomain
IPR050130ATP-dependent Clp protease/Chaperone ClpA/ClpBFamily
IPR028299ClpA/B, conserved site 2Conserved Site
IPR003593AAA+ ATPase domainDomain
IPR003959ATPase, AAA-type, coreDomain
IPR001943UVR domainDomain
IPR019489Clp ATPase, C-terminalDomain
IPR036628Clp, N-terminal domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR008681Negative regulator of genetic competence, MecAFamily
IPR038471MecA, C-terminal domain superfamilyHomologous Superfamily