6FQX | pdb_00006fqx

Plasmodium falciparum 6-phosphogluconate dehydrogenase in its apo form, in complex with its cofactor NADP+ and in complex with its substrate 6-phosphogluconate

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Hd6fqxh2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Hd6fqxh1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Gd6fqxg2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Gd6fqxg1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Fd6fqxf2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Fd6fqxf1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Ed6fqxe2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Ed6fqxe1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Dd6fqxd2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Dd6fqxd1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Cd6fqxc2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Cd6fqxc1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Bd6fqxb2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Bd6fqxb1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Ad6fqxa2 All alpha proteins 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Ad6fqxa1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
He6fqxH1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
Ge6fqxG1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
Fe6fqxF1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
Ee6fqxE1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
De6fqxD1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
Ce6fqxC1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
Be6fqxB1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: OB_NTP_bindF:ECOD (20:10:01)
Ae6fqxA1 A: L-aspartase middle domain-likeX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: AAA, TIP49F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
H1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
G3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
G1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
F3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
F1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
F1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
E3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
E1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
D1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
C1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
B1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A1.10.1040.10 Mainly Alpha Orthogonal Bundle N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase domain 2CATH (4.3.0)
A1.20.5.320 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces 6-Phosphogluconate Dehydrogenase, domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF003936-phosphogluconate dehydrogenase, C-terminal domain (6PGD)6-phosphogluconate dehydrogenase, C-terminal domainThis family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Domain
A, B, C, D, E
PF03446NAD binding domain of 6-phosphogluconate dehydrogenase (NAD_binding_2)NAD binding domain of 6-phosphogluconate dehydrogenaseThe NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
6-phosphogluconate dehydrogenase, decarboxylating

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR0061156-phosphogluconate dehydrogenase, NADP-bindingDomain
A, B, C, D, E
IPR0061146-phosphogluconate dehydrogenase, C-terminalDomain
A, B, C, D, E
IPR0089276-phosphogluconate dehydrogenase-like, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR0061136-phosphogluconate dehydrogenase, decarboxylatingFamily
A, B, C, D, E
IPR0133286-phosphogluconate dehydrogenase, domain 2Homologous Superfamily
A, B, C, D, E
IPR0061836-phosphogluconate dehydrogenaseFamily