6G9S
Structural basis for the inhibition of E. coli PBP2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PBP_dimer | e6g9sA2 | A: beta complex topology | X: Penicillin binding protein dimerisation domain (From Topology) | H: Penicillin binding protein dimerisation domain (From Topology) | T: Penicillin binding protein dimerisation domain | F: PBP_dimer | ECOD (1.6) |
A | Transpeptidase_1st_1 | e6g9sA3 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st_1 | ECOD (1.6) |
A | UNK_F_TYPE | e6g9sA1 | A: a+b two layers | X: ClpS-like | H: Penicillin binding protein ClpS-like domain (From Topology) | T: Penicillin binding protein ClpS-like domain | F: UNK_F_TYPE | ECOD (1.6) |
A | Transpeptidase_2nd | e6g9sA4 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03717 | Penicillin-binding Protein dimerisation domain (PBP_dimer) | Penicillin-binding Protein dimerisation domain | This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerisation. The domain forms a largely disordered 'sugar tongs' st ... | Domain | |
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR017790 | Penicillin-binding protein 2 | Family | |
IPR050515 | Bacterial Transpeptidases and Beta-Lactamases | Family | |
IPR036138 | Penicillin-binding protein, dimerisation domain superfamily | Homologous Superfamily | |
IPR005311 | Penicillin-binding protein, dimerisation domain | Domain | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain |