6H0F
Structure of DDB1-CRBN-pomalidomide complex bound to IKZF1(ZF2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2B (2022-06-29) |
L | SCOP2 Family | Classic zinc finger, C2H2 | 8094161 | 4003583 | SCOP2 (2022-06-29) |
L | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | LON_substr_bdg | e6h0fB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: LON_substr_bdg | ECOD (1.6) |
B | Yippee-Mis18_1 | e6h0fB2 | A: beta complex topology | X: ETN0001 domain-like (From Homology) | H: ETN0001 domain-like | T: Mss4-like | F: Yippee-Mis18_1 | ECOD (1.6) |
E | LON_substr_bdg | e6h0fE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: LON_substr_bdg | ECOD (1.6) |
E | Yippee-Mis18_1 | e6h0fE2 | A: beta complex topology | X: ETN0001 domain-like (From Homology) | H: ETN0001 domain-like | T: Mss4-like | F: Yippee-Mis18_1 | ECOD (1.6) |
K | LON_substr_bdg | e6h0fK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: LON_substr_bdg | ECOD (1.6) |
K | Yippee-Mis18_1 | e6h0fK2 | A: beta complex topology | X: ETN0001 domain-like (From Homology) | H: ETN0001 domain-like | T: Mss4-like | F: Yippee-Mis18_1 | ECOD (1.6) |
H | LON_substr_bdg | e6h0fH2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: LON_substr_bdg | ECOD (1.6) |
H | Yippee-Mis18_1 | e6h0fH1 | A: beta complex topology | X: ETN0001 domain-like (From Homology) | H: ETN0001 domain-like | T: Mss4-like | F: Yippee-Mis18_1 | ECOD (1.6) |
F | zf-C2H2_1 | e6h0fF1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_1 | ECOD (1.6) |
I | zf-C2H2_1 | e6h0fI1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_1 | ECOD (1.6) |
C | zf-C2H2_1 | e6h0fC1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_1 | ECOD (1.6) |
L | zf-C2H2_1 | e6h0fL1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_1 | ECOD (1.6) |
A | CPSF_A_N | e6h0fA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
A | MMS1_N_N | e6h0fA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
A | CPSF_A_C | e6h0fA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
D | CPSF_A_N | e6h0fD3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
D | MMS1_N_N | e6h0fD2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
D | CPSF_A_C | e6h0fD1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
G | CPSF_A_N | e6h0fG3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
G | MMS1_N_N | e6h0fG2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
G | CPSF_A_C | e6h0fG1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
J | CPSF_A_N | e6h0fJ2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
J | MMS1_N_N | e6h0fJ3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
J | CPSF_A_C | e6h0fJ1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02190 | ATP-dependent protease La (LON) substrate-binding domain (LON_substr_bdg) | ATP-dependent protease La (LON) substrate-binding domain | - | Family | |
PF03226 | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly (Yippee-Mis18) | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly | This family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of ... | Domain | |
PF00096 | Zinc finger, C2H2 type (zf-C2H2) | Zinc finger, C2H2 type | The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, an ... | Domain | |
PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015947 | PUA-like superfamily | Homologous Superfamily | |
IPR046336 | Lon protease, N-terminal domain superfamily | Homologous Superfamily | |
IPR004910 | Yippee/Mis18/Cereblon | Domain | |
IPR003111 | Lon protease, N-terminal domain | Domain | |
IPR034750 | CULT domain | Domain | |
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
IPR050589 | Ikaros C2H2-type zinc-finger | Family | |
IPR018846 | Cleavage/polyadenylation specificity factor, A subunit, N-terminal | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR004871 | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Domain | |
IPR050358 | RSE1/DDB1/CFT1/CPSF1 | Family |