6HIZ
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth DJ] | UNK_F_TYPE | e6hizDJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: UNK_F_TYPE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
K [auth DT] | PF00581 | Rhodanese-like domain (Rhodanese) | Rhodanese-like domain | Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. | Domain |
Q [auth CI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
R [auth CJ] | PF01476 | LysM domain (LysM) | LysM domain | The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
K [auth DT] | IPR001763 | Rhodanese-like domain | Domain |
K [auth DT] | IPR036873 | Rhodanese-like domain superfamily | Homologous Superfamily |
Q [auth CI] | IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily |
Q [auth CI] | IPR000754 | Small ribosomal subunit protein uS9 | Family |
Q [auth CI] | IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily |
R [auth CJ] | IPR018392 | LysM domain | Domain |
S [auth CK] | IPR036967 | Small ribosomal subunit protein uS11 superfamily | Homologous Superfamily |
U [auth CR] | IPR036870 | Small ribosomal subunit protein bS18 superfamily | Homologous Superfamily |
W [auth Cg] | IPR019368 | Small ribosomal subunit protein mS29 | Family |
G [auth DG] | IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
H [auth DH] | IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |