Annotations: 6ICM

Pseudomonas putida CBB5 NdmA with ferredoxin domain of NdmD

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	2Fe-2S ferredoxin domains from multidomain proteins	8095758	4000241	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	2Fe-2S ferredoxin-like	8095759	3000113	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TSP_1	e6icmD1	A: beta barrels	X: Ribosomal protein S5 domain 2-like	H: Ntn	T: Proteasome subunits	F: TSP_1	ECOD (v294.2)
A	V-set	e6icmA1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (v294.2)
B	V-set	e6icmB1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (v294.2)
C	V-set	e6icmC1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Oxidoreductase NdmD	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	catabolic process alkaloid catabolic process metabolic process cellular process alkaloid metabolic process	-
A, B, C	Methylxanthine N1-demethylase NdmA	oxidoreductase activity catalytic activity demethylase activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	catabolic process alkaloid catabolic process metabolic process cellular process alkaloid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
D	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
D	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
D	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
D	IPR039261	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Homologous Superfamily
D	IPR017938	Riboflavin synthase-like beta-barrel	Homologous Superfamily
D	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
D	IPR017927	FAD-binding domain, ferredoxin reductase-type	Domain
D	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
D	IPR050415	Multicomponent Reductase Electron Transfer	Family
A, B, C	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
A, B, C	IPR044043	Vanillate O-demethylase oxygenase-like, C-terminal catalytic domain	Domain
A, B, C	IPR050584	Cholesterol 7-desaturase	Family
A, B, C	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily

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