XFEL structure of cyanobacterial photosystem II (3F state, dataset2)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| K [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| EA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| I [auth J] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| CA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| BA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| AA [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| Z [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| Y [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| X [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| W [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| V [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| S [auth Z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| MA [auth z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| Q [auth Y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| KA [auth y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| N [auth T] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| HA [auth t] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| GA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| L [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| FA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| J [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
| DA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| K [auth L] | e6jlpL1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| EA [auth l] | e6jlpl1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| I [auth J] | e6jlpJ1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| CA [auth j] | e6jlpj1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| H [auth I] | e6jlpI1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| BA [auth i] | e6jlpi1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| G [auth H] | e6jlpH1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| AA [auth h] | e6jlph1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| Z [auth f] | e6jlpf1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| F | e6jlpF1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| Y [auth e] | e6jlpe1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| E | e6jlpE1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| X [auth d] | e6jlpd1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| D | e6jlpD1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| W [auth c] | e6jlpc1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| C | e6jlpC1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| T [auth R] | e6jlpR1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| V [auth b] | e6jlpb1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| B | e6jlpB1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| S [auth Z] | e6jlpZ1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| MA [auth z] | e6jlpz1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| R [auth X] | e6jlpX1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| LA [auth x] | e6jlpx1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| Q [auth Y] | e6jlpY1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| KA [auth y] | e6jlpy1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| P [auth V] | e6jlpV1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| JA [auth v] | e6jlpv1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| O [auth U] | e6jlpU1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| IA [auth u] | e6jlpu1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| N [auth T] | e6jlpT1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| HA [auth t] | e6jlpt1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| M [auth O] | e6jlpO1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| GA [auth o] | e6jlpo1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| L [auth M] | e6jlpM1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| FA [auth m] | e6jlpm1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| J [auth K] | e6jlpK1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| DA [auth k] | e6jlpk1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| U [auth a] | e6jlpa1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) | |
| A | e6jlpA1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: PSII | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem II by femtosecond X-ray pulses, dark state, dataset1 |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| BA [auth i], H [auth I] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| HA [auth t], N [auth T] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| FA [auth m], L [auth M] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |














