6JW5 | pdb_00006jw5

RVD Q* recognizes 5hmC through water-mediated H bonds

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae6jw5A1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF:ECOD (develop294)
D [auth B]e6jw5B1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF:ECOD (develop294)
G [auth E]e6jw5E1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF:ECOD (develop294)
J [auth H]e6jw5H1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF:ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B],
G [auth E],
J [auth H]		TAL effector- -
B [auth I],
E [auth C],
H [auth F],
K		DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3')---
C [auth J],
F [auth D],
I [auth G],
L		DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
D [auth B],
G [auth E],
J [auth H]		IPR053450Transcription activator-like effector proteinFamily
A,
D [auth B],
G [auth E],
J [auth H]		IPR005042TAL effector repeatRepeat