6KMX

Structure of PSI from H. hongdechloris grown under far-red light condition


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth aA]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8096591 4002118 SCOP2 (2022-06-29)
A [auth aA]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8096592 3000850 SCOP2 (2022-06-29)
S [auth cA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8096592 3000850 SCOP2B (2022-06-29)
J [auth bA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8096592 3000850 SCOP2B (2022-06-29)
B [auth aB]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8093921 4002118 SCOP2 (2022-06-29)
B [auth aB]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8093922 3000850 SCOP2 (2022-06-29)
T [auth cB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8093922 3000850 SCOP2B (2022-06-29)
K [auth bB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8093922 3000850 SCOP2B (2022-06-29)
L [auth bC]SCOP2B Superfamily4Fe-4S ferredoxins8093704 3000020 SCOP2B (2022-06-29)
C [auth aC]SCOP2B Superfamily4Fe-4S ferredoxins8093704 3000020 SCOP2B (2022-06-29)
U [auth cC]SCOP2 Family7-Fe ferredoxin8093703 4001227 SCOP2 (2022-06-29)
U [auth cC]SCOP2 Superfamily4Fe-4S ferredoxins8093704 3000020 SCOP2 (2022-06-29)
E [auth aE]SCOP2 FamilyPhotosystem I accessory protein E (PsaE)8093955 4001749 SCOP2 (2022-06-29)
E [auth aE]SCOP2 SuperfamilyElectron transport accessory proteins8093956 3000325 SCOP2 (2022-06-29)
N [auth bE]SCOP2B SuperfamilyElectron transport accessory proteins8093956 3000325 SCOP2B (2022-06-29)
W [auth cE]SCOP2B SuperfamilyElectron transport accessory proteins8093956 3000325 SCOP2B (2022-06-29)
O [auth bI]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre PsaI8095665 3000819 SCOP2B (2022-06-29)
X [auth cI]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre PsaI8095665 3000819 SCOP2B (2022-06-29)
F [auth aI]SCOP2 FamilySubunit VIII of photosystem I reaction centre PsaI8095664 4002098 SCOP2 (2022-06-29)
F [auth aI]SCOP2 SuperfamilySubunit VIII of photosystem I reaction centre PsaI8095665 3000819 SCOP2 (2022-06-29)
P [auth bK]SCOP2B SuperfamilyPhotosystem I reaction center subunit X PsaK8094805 3000859 SCOP2B (2022-06-29)
G [auth aK]SCOP2B SuperfamilyPhotosystem I reaction center subunit X PsaK8094805 3000859 SCOP2B (2022-06-29)
Y [auth cK]SCOP2 FamilyPhotosystem I reaction center subunit X PsaK8094804 4002128 SCOP2 (2022-06-29)
Y [auth cK]SCOP2 SuperfamilyPhotosystem I reaction center subunit X PsaK8094805 3000859 SCOP2 (2022-06-29)
H [auth aL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8095493 3000870 SCOP2B (2022-06-29)
Q [auth bL]SCOP2 FamilyPhotosystem I reaction center subunit XI PsaL8095492 4002135 SCOP2 (2022-06-29)
Q [auth bL]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI PsaL8095493 3000870 SCOP2 (2022-06-29)
Z [auth cL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8095493 3000870 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth aA]PsaA_PsaB_Ce6kmxaA2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
A [auth aA]PsaA_PsaB_Ne6kmxaA1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
S [auth cA]PsaA_PsaB_Ce6kmxcA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
S [auth cA]PsaA_PsaB_Ne6kmxcA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
J [auth bA]PsaA_PsaB_Ce6kmxbA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
J [auth bA]PsaA_PsaB_Ne6kmxbA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
B [auth aB]PsaA_PsaB_Ce6kmxaB1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
B [auth aB]PsaA_PsaB_Ne6kmxaB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
T [auth cB]PsaA_PsaB_Ce6kmxcB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
T [auth cB]PsaA_PsaB_Ne6kmxcB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
K [auth bB]PsaA_PsaB_Ce6kmxbB1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
K [auth bB]PsaA_PsaB_Ne6kmxbB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
L [auth bC]Fer4_21_1e6kmxbC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
C [auth aC]Fer4_21_1e6kmxaC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
U [auth cC]Fer4_21_1e6kmxcC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
M [auth bD]PsaDe6kmxbD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PsaDECOD (1.6)
V [auth cD]PsaDe6kmxcD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PsaDECOD (1.6)
D [auth aD]PsaDe6kmxaD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PsaDECOD (1.6)
E [auth aE]PSI_PsaEe6kmxaE1 A: beta barrelsX: SH3H: SH3T: SH3F: PSI_PsaEECOD (1.6)
N [auth bE]PSI_PsaEe6kmxbE1 A: beta barrelsX: SH3H: SH3T: SH3F: PSI_PsaEECOD (1.6)
W [auth cE]PSI_PsaEe6kmxcE1 A: beta barrelsX: SH3H: SH3T: SH3F: PSI_PsaEECOD (1.6)
O [auth bI]PSI_8e6kmxbI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PSI_8ECOD (1.6)
X [auth cI]PSI_8e6kmxcI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PSI_8ECOD (1.6)
F [auth aI]PSI_8e6kmxaI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PSI_8ECOD (1.6)
P [auth bK]PSI_PSAKe6kmxbK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PSI_PSAKECOD (1.6)
G [auth aK]PSI_PSAKe6kmxaK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PSI_PSAKECOD (1.6)
Y [auth cK]PSI_PSAKe6kmxcK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PSI_PSAKECOD (1.6)
H [auth aL]PsaLe6kmxaL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PsaLECOD (1.6)
Q [auth bL]PsaLe6kmxbL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PsaLECOD (1.6)
Z [auth cL]PsaLe6kmxcL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PsaLECOD (1.6)
AA [auth cM]PsaMe6kmxcM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PsaMECOD (1.6)
I [auth aM]PsaMe6kmxaM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PsaMECOD (1.6)
R [auth bM]PsaMe6kmxbM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PsaMECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth aA],
J [auth bA],
S [auth cA]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
B [auth aB],
K [auth bB],
T [auth cB]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
C [auth aC],
L [auth bC],
U [auth cC]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
D [auth aD],
M [auth bD],
V [auth cD]
PF02531PsaD (PsaD)PsaD- Family
E [auth aE],
N [auth bE],
W [auth cE]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
G [auth aK],
P [auth bK],
Y [auth cK]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
H [auth aL],
Q [auth bL],
Z [auth cL]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth aA],
J [auth bA],
S [auth cA]
Photosystem I P700 chlorophyll a apoprotein A1
B [auth aB],
K [auth bB],
T [auth cB]
Photosystem I P700 chlorophyll a apoprotein A2
C [auth aC],
L [auth bC],
U [auth cC]
Photosystem I iron-sulfur center
D [auth aD],
M [auth bD],
V [auth cD]
Photosystem I reaction center subunit II
E [auth aE],
N [auth bE],
W [auth cE]
Photosystem I reaction center subunit IV
F [auth aI],
O [auth bI],
X [auth cI]
Photosystem I reaction center subunit VIII
G [auth aK],
P [auth bK],
Y [auth cK]
Photosystem I reaction center subunit PsaK
H [auth aL],
Q [auth bL],
Z [auth cL]
Photosystem I reaction center subunit XI
AA [auth cM],
I [auth aM],
R [auth bM]
Photosystem I reaction center subunit XII---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth aA],
J [auth bA],
S [auth cA]
IPR006243Photosystem I PsaAFamily
A [auth aA],
J [auth bA],
S [auth cA]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth aA],
J [auth bA],
S [auth cA]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth aA],
J [auth bA],
S [auth cA]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
B [auth aB],
K [auth bB],
T [auth cB]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth aB],
K [auth bB],
T [auth cB]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth aB],
K [auth bB],
T [auth cB]
IPR006244Photosystem I PsaBFamily
B [auth aB],
K [auth bB],
T [auth cB]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
C [auth aC],
L [auth bC],
U [auth cC]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth aC],
L [auth bC],
U [auth cC]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C [auth aC],
L [auth bC],
U [auth cC]
IPR017491Photosystem I protein PsaCFamily
D [auth aD],
M [auth bD],
V [auth cD]
IPR003685Photosystem I PsaDFamily
D [auth aD],
M [auth bD],
V [auth cD]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
E [auth aE],
N [auth bE],
W [auth cE]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E [auth aE],
N [auth bE],
W [auth cE]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
F [auth aI],
O [auth bI],
X [auth cI]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
G [auth aK],
P [auth bK],
Y [auth cK]
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
G [auth aK],
P [auth bK],
Y [auth cK]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
G [auth aK],
P [auth bK],
Y [auth cK]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
G [auth aK],
P [auth bK],
Y [auth cK]
IPR017492Photosystem I reaction center subunit PsaKFamily
H [auth aL],
Q [auth bL],
Z [auth cL]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
H [auth aL],
Q [auth bL],
Z [auth cL]
IPR022980Photosystem I, reaction centre subunit XIFamily
H [auth aL],
Q [auth bL],
Z [auth cL]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily