6KMX
Structure of PSI from H. hongdechloris grown under far-red light condition
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth aA] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8096591 | 4002118 | SCOP2 (2022-06-29) |
A [auth aA] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8096592 | 3000850 | SCOP2 (2022-06-29) |
S [auth cA] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8096592 | 3000850 | SCOP2B (2022-06-29) |
J [auth bA] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8096592 | 3000850 | SCOP2B (2022-06-29) |
B [auth aB] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8093921 | 4002118 | SCOP2 (2022-06-29) |
B [auth aB] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8093922 | 3000850 | SCOP2 (2022-06-29) |
T [auth cB] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093922 | 3000850 | SCOP2B (2022-06-29) |
K [auth bB] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093922 | 3000850 | SCOP2B (2022-06-29) |
L [auth bC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093704 | 3000020 | SCOP2B (2022-06-29) |
C [auth aC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093704 | 3000020 | SCOP2B (2022-06-29) |
U [auth cC] | SCOP2 Family | 7-Fe ferredoxin | 8093703 | 4001227 | SCOP2 (2022-06-29) |
U [auth cC] | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8093704 | 3000020 | SCOP2 (2022-06-29) |
E [auth aE] | SCOP2 Family | Photosystem I accessory protein E (PsaE) | 8093955 | 4001749 | SCOP2 (2022-06-29) |
E [auth aE] | SCOP2 Superfamily | Electron transport accessory proteins | 8093956 | 3000325 | SCOP2 (2022-06-29) |
N [auth bE] | SCOP2B Superfamily | Electron transport accessory proteins | 8093956 | 3000325 | SCOP2B (2022-06-29) |
W [auth cE] | SCOP2B Superfamily | Electron transport accessory proteins | 8093956 | 3000325 | SCOP2B (2022-06-29) |
O [auth bI] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8095665 | 3000819 | SCOP2B (2022-06-29) |
X [auth cI] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8095665 | 3000819 | SCOP2B (2022-06-29) |
F [auth aI] | SCOP2 Family | Subunit VIII of photosystem I reaction centre PsaI | 8095664 | 4002098 | SCOP2 (2022-06-29) |
F [auth aI] | SCOP2 Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8095665 | 3000819 | SCOP2 (2022-06-29) |
P [auth bK] | SCOP2B Superfamily | Photosystem I reaction center subunit X PsaK | 8094805 | 3000859 | SCOP2B (2022-06-29) |
G [auth aK] | SCOP2B Superfamily | Photosystem I reaction center subunit X PsaK | 8094805 | 3000859 | SCOP2B (2022-06-29) |
Y [auth cK] | SCOP2 Family | Photosystem I reaction center subunit X PsaK | 8094804 | 4002128 | SCOP2 (2022-06-29) |
Y [auth cK] | SCOP2 Superfamily | Photosystem I reaction center subunit X PsaK | 8094805 | 3000859 | SCOP2 (2022-06-29) |
H [auth aL] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8095493 | 3000870 | SCOP2B (2022-06-29) |
Q [auth bL] | SCOP2 Family | Photosystem I reaction center subunit XI PsaL | 8095492 | 4002135 | SCOP2 (2022-06-29) |
Q [auth bL] | SCOP2 Superfamily | Photosystem I reaction center subunit XI PsaL | 8095493 | 3000870 | SCOP2 (2022-06-29) |
Z [auth cL] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8095493 | 3000870 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth aA] | PsaA_PsaB_C | e6kmxaA2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
A [auth aA] | PsaA_PsaB_N | e6kmxaA1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
S [auth cA] | PsaA_PsaB_C | e6kmxcA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
S [auth cA] | PsaA_PsaB_N | e6kmxcA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
J [auth bA] | PsaA_PsaB_C | e6kmxbA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
J [auth bA] | PsaA_PsaB_N | e6kmxbA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
B [auth aB] | PsaA_PsaB_C | e6kmxaB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
B [auth aB] | PsaA_PsaB_N | e6kmxaB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
T [auth cB] | PsaA_PsaB_C | e6kmxcB2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
T [auth cB] | PsaA_PsaB_N | e6kmxcB1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
K [auth bB] | PsaA_PsaB_C | e6kmxbB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
K [auth bB] | PsaA_PsaB_N | e6kmxbB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
L [auth bC] | Fer4_21_1 | e6kmxbC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
C [auth aC] | Fer4_21_1 | e6kmxaC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
U [auth cC] | Fer4_21_1 | e6kmxcC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
M [auth bD] | PsaD | e6kmxbD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
V [auth cD] | PsaD | e6kmxcD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
D [auth aD] | PsaD | e6kmxaD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
E [auth aE] | PSI_PsaE | e6kmxaE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
N [auth bE] | PSI_PsaE | e6kmxbE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
W [auth cE] | PSI_PsaE | e6kmxcE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
O [auth bI] | PSI_8 | e6kmxbI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
X [auth cI] | PSI_8 | e6kmxcI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
F [auth aI] | PSI_8 | e6kmxaI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
P [auth bK] | PSI_PSAK | e6kmxbK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
G [auth aK] | PSI_PSAK | e6kmxaK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
Y [auth cK] | PSI_PSAK | e6kmxcK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
H [auth aL] | PsaL | e6kmxaL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
Q [auth bL] | PsaL | e6kmxbL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
Z [auth cL] | PsaL | e6kmxcL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
AA [auth cM] | PsaM | e6kmxcM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
I [auth aM] | PsaM | e6kmxaM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
R [auth bM] | PsaM | e6kmxbM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth aA], J [auth bA], S [auth cA] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
B [auth aB], K [auth bB], T [auth cB] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
C [auth aC], L [auth bC], U [auth cC] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
D [auth aD], M [auth bD], V [auth cD] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
E [auth aE], N [auth bE], W [auth cE] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
G [auth aK], P [auth bK], Y [auth cK] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
H [auth aL], Q [auth bL], Z [auth cL] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I grown under white light conditions |