6LGL

The atomic structure of varicella-zoster virus A-capsid

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], H [auth X], J [auth Y], L [auth Z], N [auth a], P [auth b], R [auth c], T [auth d], V [auth H], X [auth I], Z [auth J]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], H [auth X], J [auth Y], L [auth Z], N [auth a], P [auth b], R [auth c], T [auth d], V [auth H], X [auth I], Z [auth J]	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], H [auth X], J [auth Y], L [auth Z], N [auth a], P [auth b], R [auth c], T [auth d], V [auth H], X [auth I], Z [auth J]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], H [auth X], J [auth Y], L [auth Z], N [auth a], P [auth b], R [auth c], T [auth d], V [auth H], X [auth I], Z [auth J]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle
EA [auth e], HA [auth f], KA [auth g], NA [auth h], QA [auth i]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle
FA [auth j], GA [auth o], IA [auth k], JA [auth p], LA [auth l], FA [auth j], GA [auth o], IA [auth k], JA [auth p], LA [auth l], MA [auth q], OA [auth m], PA [auth r], RA [auth n], SA [auth s]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	IPR000912	Herpesvirus major capsid protein	Family
A, AA [auth F], C [auth M], CA [auth G], E [auth N], A, AA [auth F], C [auth M], CA [auth G], E [auth N], G [auth O], I [auth P], K [auth Q], M [auth R], O [auth S], Q [auth T], S [auth U], TA [auth z], U [auth B], W [auth C], Y [auth E]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], B [auth D], BA [auth K], D [auth V], DA [auth L], F [auth W], H [auth X], J [auth Y], L [auth Z], N [auth a], P [auth b], R [auth c], T [auth d], V [auth H], X [auth I], Z [auth J]	IPR007584	Herpesvirus UL35	Family
EA [auth e], HA [auth f], KA [auth g], NA [auth h], QA [auth i]	IPR004999	Herpesvirus capsid shell protein 1	Family
FA [auth j], GA [auth o], IA [auth k], JA [auth p], LA [auth l], FA [auth j], GA [auth o], IA [auth k], JA [auth p], LA [auth l], MA [auth q], OA [auth m], PA [auth r], RA [auth n], SA [auth s]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.