6LS9 | pdb_00006ls9

Crystal structure of bovine herpesvirus 1 glycoprotein D

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFer2_3e6ls9A1 A: beta barrelsX: Tail specific protease helical domainH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Fer2_3ECOD (v294.2)
BFer2_3e6ls9B1 A: beta barrelsX: Tail specific protease helical domainH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Fer2_3ECOD (v294.2)
CFer2_3e6ls9C1 A: beta barrelsX: Tail specific protease helical domainH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Fer2_3ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.70.230.10 Mainly Beta Distorted Sandwich Glycoprotein D Chain: ACATH (utative)
B2.70.230.10 Mainly Beta Distorted Sandwich Glycoprotein D Chain: ACATH (utative)
C2.70.230.10 Mainly Beta Distorted Sandwich Glycoprotein D Chain: ACATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF01537Herpesvirus glycoprotein D/GG/GX domain (Herpes_glycop_D)Herpesvirus glycoprotein D/GG/GX domainThis domain is found in several Herpes viruses glycoproteins. This is a family includes glycoprotein-D (gD or gIV) which is common to herpes simplex virus types 1 and 2, as well as equine herpes, bovine herpes and Marek's disease virus. Glycoprotein- ...This domain is found in several Herpes viruses glycoproteins. This is a family includes glycoprotein-D (gD or gIV) which is common to herpes simplex virus types 1 and 2, as well as equine herpes, bovine herpes and Marek's disease virus. Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. and gD immunisation can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1. Glycoprotein G (gG)is one of the seven external glycoproteins of HSV1 and HSV2. This family also contains the glycoprotein GX, (gX), initially identified in Pseudorabies virus.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Envelope glycoprotein D- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A, B, C
IPR002896Herpesvirus glycoprotein D/GG/GX domainDomain