6LZ2

Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb44)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6lz2a_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Galaxea fascicularis ) [TaxId: 46745 ],	SCOPe (2.08)
C	d6lz2c_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Galaxea fascicularis ) [TaxId: 46745 ],	SCOPe (2.08)
B	d6lz2b_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
D	d6lz2d1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
D	d6lz2d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GFP	e6lz2A1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
C	GFP	e6lz2C1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
B	V-set_8	e6lz2B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
D	V-set_10	e6lz2D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_10	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B, D	syAb 44	VH	Lama glama (llama)	IGHV3S301, IGHJ401	V-DOMAIN VH	IG	VH	IMGT (202507-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B, D	Heavy Chain	IGHV1	-	thermostable green fluorescent protein	SAbDab (2025-02-28)

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C	CRQ	Parent Component: GLN, TYR, GLY RESID: AA0189 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.