6MZV | pdb_00006mzv

Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, widened inner ring

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth JB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Y [auth JA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
X [auth IF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
W [auth IE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
V [auth ID]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
U [auth IC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
T [auth IB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
S [auth IA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
R [auth HF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Q [auth HE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
PA [auth LF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
P [auth HD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
OA [auth LE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
O [auth HC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
NA [auth LD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
N [auth HB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
MA [auth LC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
M [auth HA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
LA [auth LB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
L [auth GF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
KA [auth LA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
K [auth GE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
JA [auth KF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
J [auth GD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
IA [auth KE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
I [auth GC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
HA [auth KD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
H [auth GB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
GA [auth KC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
G [auth GA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
FA [auth KB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
EA [auth KA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
DA [auth JF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
CA [auth JE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
BA [auth JD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
AA [auth JC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth JB]	Tfb4	e6mzvJB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
Y [auth JA]	Tfb4	e6mzvJA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
X [auth IF]	Tfb4	e6mzvIF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
W [auth IE]	Tfb4	e6mzvIE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
V [auth ID]	Tfb4	e6mzvID1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
U [auth IC]	Tfb4	e6mzvIC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
T [auth IB]	Tfb4	e6mzvIB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
S [auth IA]	Tfb4	e6mzvIA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
R [auth HF]	Tfb4	e6mzvHF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
Q [auth HE]	Tfb4	e6mzvHE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
PA [auth LF]	Tfb4	e6mzvLF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
P [auth HD]	Tfb4	e6mzvHD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
OA [auth LE]	Tfb4	e6mzvLE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
O [auth HC]	Tfb4	e6mzvHC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
NA [auth LD]	Tfb4	e6mzvLD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
N [auth HB]	Tfb4	e6mzvHB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
MA [auth LC]	Tfb4	e6mzvLC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
M [auth HA]	Tfb4	e6mzvHA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
LA [auth LB]	Tfb4	e6mzvLB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
L [auth GF]	Tfb4	e6mzvGF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
KA [auth LA]	Tfb4	e6mzvLA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
K [auth GE]	Tfb4	e6mzvGE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
JA [auth KF]	Tfb4	e6mzvKF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
J [auth GD]	Tfb4	e6mzvGD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
IA [auth KE]	Tfb4	e6mzvKE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
I [auth GC]	Tfb4	e6mzvGC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
HA [auth KD]	Tfb4	e6mzvKD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
H [auth GB]	Tfb4	e6mzvGB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
GA [auth KC]	Tfb4	e6mzvKC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
G [auth GA]	Tfb4	e6mzvGA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
FA [auth KB]	Tfb4	e6mzvKB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
EA [auth KA]	Tfb4	e6mzvKA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
DA [auth JF]	Tfb4	e6mzvJF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
CA [auth JE]	Tfb4	e6mzvJE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
BA [auth JD]	Tfb4	e6mzvJD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
AA [auth JC]	Tfb4	e6mzvJC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
F	Tfb4	e6mzvF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
E	Tfb4	e6mzvE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
D	Tfb4	e6mzvD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
C	Tfb4	e6mzvC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
B	Tfb4	e6mzvB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
A	Tfb4	e6mzvA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain
A, B, C, D, E A, B, C, D, E, F	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle
A, B, C, D, E A, B, C, D, E, F	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR000249	Bacterial microcompartment domain	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR050575	Bacterial microcompartment shell	Family
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR037233	CcmK-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR044870	Bacterial microcompartment (BMC) circularly permuted domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037233	CcmK-like superfamily	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.