6N06 | pdb_00006n06

Cryo-EM structure of the HO BMC shell: BMC-T1 in the assembled shell

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth GA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
E [auth GB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
FA [auth KE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
G [auth GD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
GA [auth KF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
H [auth GE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
HA [auth LA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
I [auth GF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
IA [auth LB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
JA [auth LC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
K [auth HB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
L [auth HC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
LA [auth LE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
M [auth HD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
N [auth HE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
O [auth HF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
P [auth IA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Q [auth IB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
R [auth IC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
S [auth ID]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
T [auth IE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
U [auth IF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
V [auth JA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
W [auth JB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
X [auth JC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Y [auth JD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Z [auth JE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
MA [auth LF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
KA [auth LD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
J [auth HA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
F [auth GC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
EA [auth KD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
DA [auth KC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
CA [auth KB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
BA [auth KA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
AA [auth JF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth GA]	Tfb4	e6n06GA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
E [auth GB]	Tfb4	e6n06GB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
FA [auth KE]	Tfb4	e6n06KE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
G [auth GD]	Tfb4	e6n06GD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
GA [auth KF]	Tfb4	e6n06KF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
H [auth GE]	Tfb4	e6n06GE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
HA [auth LA]	Tfb4	e6n06LA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
I [auth GF]	Tfb4	e6n06GF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
IA [auth LB]	Tfb4	e6n06LB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
JA [auth LC]	Tfb4	e6n06LC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
K [auth HB]	Tfb4	e6n06HB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
L [auth HC]	Tfb4	e6n06HC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
LA [auth LE]	Tfb4	e6n06LE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
M [auth HD]	Tfb4	e6n06HD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
N [auth HE]	Tfb4	e6n06HE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
O [auth HF]	Tfb4	e6n06HF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
P [auth IA]	Tfb4	e6n06IA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
Q [auth IB]	Tfb4	e6n06IB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
R [auth IC]	Tfb4	e6n06IC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
S [auth ID]	Tfb4	e6n06ID1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
T [auth IE]	Tfb4	e6n06IE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
U [auth IF]	Tfb4	e6n06IF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
V [auth JA]	Tfb4	e6n06JA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
W [auth JB]	Tfb4	e6n06JB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
X [auth JC]	Tfb4	e6n06JC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
Y [auth JD]	Tfb4	e6n06JD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
Z [auth JE]	Tfb4	e6n06JE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
MA [auth LF]	Tfb4	e6n06LF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
KA [auth LD]	Tfb4	e6n06LD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
J [auth HA]	Tfb4	e6n06HA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
F [auth GC]	Tfb4	e6n06GC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
EA [auth KD]	Tfb4	e6n06KD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
DA [auth KC]	Tfb4	e6n06KC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
CA [auth KB]	Tfb4	e6n06KB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
BA [auth KA]	Tfb4	e6n06KA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
AA [auth JF]	Tfb4	e6n06JF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
A	Tfb4	e6n06A1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
B	Tfb4	e6n06B1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)
C	Tfb4	e6n06C1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Tfb4	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain
A, B, C	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle
A, B, C	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	IPR000249	Bacterial microcompartment domain	Domain
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	IPR050575	Bacterial microcompartment shell	Family
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], AA [auth JF], BA [auth KA], CA [auth KB], D [auth GA], DA [auth KC], E [auth GB], EA [auth KD], F [auth GC], FA [auth KE], G [auth GD], GA [auth KF], H [auth GE], HA [auth LA], I [auth GF], IA [auth LB], J [auth HA], JA [auth LC], K [auth HB], KA [auth LD], L [auth HC], LA [auth LE], M [auth HD], MA [auth LF], N [auth HE], O [auth HF], P [auth IA], Q [auth IB], R [auth IC], S [auth ID], T [auth IE], U [auth IF], V [auth JA], W [auth JB], X [auth JC], Y [auth JD], Z [auth JE]	IPR037233	CcmK-like superfamily	Homologous Superfamily
A, B, C	IPR011238	Bacterial microcompartment shell protein PduT	Family
A, B, C	IPR000249	Bacterial microcompartment domain	Domain
A, B, C	IPR050575	Bacterial microcompartment shell	Family
A, B, C	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C	IPR037233	CcmK-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.