Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TD-TDTDTD
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| BA [auth JD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| CA [auth JE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| DA [auth JF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| G [auth GA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| GA [auth KC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| H [auth GB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| HA [auth KD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| I [auth GC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| IA [auth KE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| J [auth GD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| K [auth GE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| L [auth GF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| LA [auth LB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| M [auth HA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| MA [auth LC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| N [auth HB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| NA [auth LD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| O [auth HC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| OA [auth LE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| P [auth HD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Q [auth HE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| R [auth HF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| T [auth IB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| U [auth IC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| V [auth ID] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| W [auth IE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| X [auth IF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Y [auth JA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Z [auth JB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| S [auth IA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| PA [auth LF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| KA [auth LA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| JA [auth KF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| FA [auth KB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| EA [auth KA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| AA [auth JC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| BA [auth JD] | Tfb4 | e6n09JD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| CA [auth JE] | Tfb4 | e6n09JE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| DA [auth JF] | Tfb4 | e6n09JF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| G [auth GA] | Tfb4 | e6n09GA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| GA [auth KC] | Tfb4 | e6n09KC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| H [auth GB] | Tfb4 | e6n09GB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| HA [auth KD] | Tfb4 | e6n09KD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| I [auth GC] | Tfb4 | e6n09GC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| IA [auth KE] | Tfb4 | e6n09KE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| J [auth GD] | Tfb4 | e6n09GD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| K [auth GE] | Tfb4 | e6n09GE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| L [auth GF] | Tfb4 | e6n09GF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| LA [auth LB] | Tfb4 | e6n09LB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| M [auth HA] | Tfb4 | e6n09HA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| MA [auth LC] | Tfb4 | e6n09LC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| N [auth HB] | Tfb4 | e6n09HB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| NA [auth LD] | Tfb4 | e6n09LD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| O [auth HC] | Tfb4 | e6n09HC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| OA [auth LE] | Tfb4 | e6n09LE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| P [auth HD] | Tfb4 | e6n09HD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Q [auth HE] | Tfb4 | e6n09HE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| R [auth HF] | Tfb4 | e6n09HF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| T [auth IB] | Tfb4 | e6n09IB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| U [auth IC] | Tfb4 | e6n09IC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| V [auth ID] | Tfb4 | e6n09ID1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| W [auth IE] | Tfb4 | e6n09IE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| X [auth IF] | Tfb4 | e6n09IF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Y [auth JA] | Tfb4 | e6n09JA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Z [auth JB] | Tfb4 | e6n09JB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| S [auth IA] | Tfb4 | e6n09IA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| PA [auth LF] | Tfb4 | e6n09LF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| KA [auth LA] | Tfb4 | e6n09LA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| JA [auth KF] | Tfb4 | e6n09KF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| FA [auth KB] | Tfb4 | e6n09KB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| EA [auth KA] | Tfb4 | e6n09KA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| AA [auth JC] | Tfb4 | e6n09JC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| A | Tfb4 | e6n09A1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| AB [auth Q] | Tfb4 | e6n09Q1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| B | Tfb4 | e6n09B1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| BB [auth R] | Tfb4 | e6n09R1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| C | Tfb4 | e6n09C1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| CB [auth S] | Tfb4 | e6n09S1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| D | Tfb4 | e6n09D1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| DB [auth T] | Tfb4 | e6n09T1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| E | Tfb4 | e6n09E1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| EB [auth U] | Tfb4 | e6n09U1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| F | Tfb4 | e6n09F1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| GB [auth W] | Tfb4 | e6n09W1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| HB [auth X] | Tfb4 | e6n09X1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| QA [auth G] | Tfb4 | e6n09G1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| RA [auth H] | Tfb4 | e6n09H1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| SA [auth I] | Tfb4 | e6n09I1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| TA [auth J] | Tfb4 | e6n09J1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| UA [auth K] | Tfb4 | e6n09K1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| VA [auth L] | Tfb4 | e6n09L1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| WA [auth M] | Tfb4 | e6n09M1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| XA [auth N] | Tfb4 | e6n09N1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| YA [auth O] | Tfb4 | e6n09O1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| ZA [auth P] | Tfb4 | e6n09P1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| FB [auth V] | Tfb4 | e6n09V1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain | |
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Microcompartments protein | - | - | ||
| Microcompartments protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR020808 | Bacterial microcompartments protein, conserved site | Conserved Site | |
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR050575 | Bacterial microcompartment shell | Family | |
| IPR044872 | CcmK/CsoS1, bacterial microcompartment domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily | |
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR044870 | Bacterial microcompartment (BMC) circularly permuted domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily |














