Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TD-TSTSTS
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| AA [auth JC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| BA [auth JD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| CA [auth JE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| DA [auth JF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| EA [auth KA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| FA [auth KB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| G [auth GA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| GA [auth KC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| H [auth GB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| HA [auth KD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| IA [auth KE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| J [auth GD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| JA [auth KF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| K [auth GE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| KA [auth LA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| L [auth GF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| LA [auth LB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| M [auth HA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| MA [auth LC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| N [auth HB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| NA [auth LD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| O [auth HC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| OA [auth LE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| P [auth HD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| PA [auth LF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| R [auth HF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| S [auth IA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| T [auth IB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| U [auth IC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| V [auth ID] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| W [auth IE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| X [auth IF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Y [auth JA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Z [auth JB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Q [auth HE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| I [auth GC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Tfb4 | e6n0fA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| B | Tfb4 | e6n0fB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| C | Tfb4 | e6n0fC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| D | Tfb4 | e6n0fD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| E | Tfb4 | e6n0fE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| F | Tfb4 | e6n0fF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| AA [auth JC] | Tfb4 | e6n0fJC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| BA [auth JD] | Tfb4 | e6n0fJD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| CA [auth JE] | Tfb4 | e6n0fJE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| DA [auth JF] | Tfb4 | e6n0fJF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| EA [auth KA] | Tfb4 | e6n0fKA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| FA [auth KB] | Tfb4 | e6n0fKB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| G [auth GA] | Tfb4 | e6n0fGA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| GA [auth KC] | Tfb4 | e6n0fKC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| H [auth GB] | Tfb4 | e6n0fGB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| HA [auth KD] | Tfb4 | e6n0fKD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| IA [auth KE] | Tfb4 | e6n0fKE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| J [auth GD] | Tfb4 | e6n0fGD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| JA [auth KF] | Tfb4 | e6n0fKF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| K [auth GE] | Tfb4 | e6n0fGE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| KA [auth LA] | Tfb4 | e6n0fLA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| L [auth GF] | Tfb4 | e6n0fGF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| LA [auth LB] | Tfb4 | e6n0fLB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| M [auth HA] | Tfb4 | e6n0fHA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| MA [auth LC] | Tfb4 | e6n0fLC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| N [auth HB] | Tfb4 | e6n0fHB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| NA [auth LD] | Tfb4 | e6n0fLD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| O [auth HC] | Tfb4 | e6n0fHC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| OA [auth LE] | Tfb4 | e6n0fLE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| P [auth HD] | Tfb4 | e6n0fHD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| PA [auth LF] | Tfb4 | e6n0fLF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| R [auth HF] | Tfb4 | e6n0fHF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| S [auth IA] | Tfb4 | e6n0fIA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| T [auth IB] | Tfb4 | e6n0fIB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| U [auth IC] | Tfb4 | e6n0fIC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| V [auth ID] | Tfb4 | e6n0fID1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| W [auth IE] | Tfb4 | e6n0fIE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| X [auth IF] | Tfb4 | e6n0fIF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Y [auth JA] | Tfb4 | e6n0fJA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Z [auth JB] | Tfb4 | e6n0fJB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Q [auth HE] | Tfb4 | e6n0fHE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| I [auth GC] | Tfb4 | e6n0fGC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| QA [auth G] | Tfb4 | e6n0fG1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| RA [auth H] | Tfb4 | e6n0fH1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| SA [auth I] | Tfb4 | e6n0fI1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| TA [auth M] | Tfb4 | e6n0fM1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| UA [auth N] | Tfb4 | e6n0fN1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| VA [auth O] | Tfb4 | e6n0fO1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| WA [auth S] | Tfb4 | e6n0fS1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| XA [auth T] | Tfb4 | e6n0fT1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| YA [auth U] | Tfb4 | e6n0fU1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain | |
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain | |
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Microcompartments protein | - | - | ||
| Microcompartments protein | - | - | ||
| Microcompartments protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR044870 | Bacterial microcompartment (BMC) circularly permuted domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily | |
| IPR020808 | Bacterial microcompartments protein, conserved site | Conserved Site | |
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR050575 | Bacterial microcompartment shell | Family | |
| IPR044872 | CcmK/CsoS1, bacterial microcompartment domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily | |
| IPR011238 | Bacterial microcompartment shell protein PduT | Family | |
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR050575 | Bacterial microcompartment shell | Family | |
| IPR044872 | CcmK/CsoS1, bacterial microcompartment domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily |














