Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TS-TDTDTD
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Z [auth JE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Y [auth JD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| X [auth JC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| W [auth JB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| V [auth JA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| U [auth IF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| T [auth IE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| S [auth ID] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| R [auth IC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| Q [auth IB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| P [auth IA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| O [auth HF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| N [auth HE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| MA [auth LF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| M [auth HD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| LA [auth LE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| L [auth HC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| KA [auth LD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| K [auth HB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| JA [auth LC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| J [auth HA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| IA [auth LB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| I [auth GF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| HA [auth LA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| H [auth GE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| GA [auth KF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| G [auth GD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| FA [auth KE] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| F [auth GC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| EA [auth KD] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| E [auth GB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| DA [auth KC] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| D [auth GA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| CA [auth KB] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| BA [auth KA] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
| AA [auth JF] | SCOP2B Superfamily | CcmK-like | 8081332 | 3001326 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| ZA [auth S] | Tfb4 | e6n0gS1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| YA [auth R] | Tfb4 | e6n0gR1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| XA [auth Q] | Tfb4 | e6n0gQ1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| WA [auth P] | Tfb4 | e6n0gP1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| VA [auth O] | Tfb4 | e6n0gO1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| UA [auth N] | Tfb4 | e6n0gN1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| TA [auth M] | Tfb4 | e6n0gM1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| SA [auth L] | Tfb4 | e6n0gL1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| RA [auth K] | Tfb4 | e6n0gK1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| QA [auth J] | Tfb4 | e6n0gJ1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| PA [auth I] | Tfb4 | e6n0gI1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| OA [auth H] | Tfb4 | e6n0gH1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| NA [auth G] | Tfb4 | e6n0gG1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| EB [auth X] | Tfb4 | e6n0gX1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| DB [auth W] | Tfb4 | e6n0gW1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| CB [auth V] | Tfb4 | e6n0gV1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| BB [auth U] | Tfb4 | e6n0gU1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| AB [auth T] | Tfb4 | e6n0gT1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Z [auth JE] | Tfb4 | e6n0gJE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Y [auth JD] | Tfb4 | e6n0gJD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| X [auth JC] | Tfb4 | e6n0gJC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| W [auth JB] | Tfb4 | e6n0gJB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| V [auth JA] | Tfb4 | e6n0gJA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| U [auth IF] | Tfb4 | e6n0gIF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| T [auth IE] | Tfb4 | e6n0gIE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| S [auth ID] | Tfb4 | e6n0gID1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| R [auth IC] | Tfb4 | e6n0gIC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| Q [auth IB] | Tfb4 | e6n0gIB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| P [auth IA] | Tfb4 | e6n0gIA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| O [auth HF] | Tfb4 | e6n0gHF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| N [auth HE] | Tfb4 | e6n0gHE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| MA [auth LF] | Tfb4 | e6n0gLF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| M [auth HD] | Tfb4 | e6n0gHD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| LA [auth LE] | Tfb4 | e6n0gLE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| L [auth HC] | Tfb4 | e6n0gHC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| KA [auth LD] | Tfb4 | e6n0gLD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| K [auth HB] | Tfb4 | e6n0gHB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| JA [auth LC] | Tfb4 | e6n0gLC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| J [auth HA] | Tfb4 | e6n0gHA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| IA [auth LB] | Tfb4 | e6n0gLB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| I [auth GF] | Tfb4 | e6n0gGF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| HA [auth LA] | Tfb4 | e6n0gLA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| H [auth GE] | Tfb4 | e6n0gGE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| GA [auth KF] | Tfb4 | e6n0gKF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| G [auth GD] | Tfb4 | e6n0gGD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| FA [auth KE] | Tfb4 | e6n0gKE1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| F [auth GC] | Tfb4 | e6n0gGC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| EA [auth KD] | Tfb4 | e6n0gKD1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| E [auth GB] | Tfb4 | e6n0gGB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| DA [auth KC] | Tfb4 | e6n0gKC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| D [auth GA] | Tfb4 | e6n0gGA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| CA [auth KB] | Tfb4 | e6n0gKB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| BA [auth KA] | Tfb4 | e6n0gKA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| AA [auth JF] | Tfb4 | e6n0gJF1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| C | Tfb4 | e6n0gC1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| B | Tfb4 | e6n0gB1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
| A | Tfb4 | e6n0gA1 | A: beta barrels | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Tfb4 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain | |
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain | |
| PF00936 | BMC domain (BMC) | BMC domain | Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Microcompartments protein | - | - | ||
| Microcompartments protein | - | - | ||
| Microcompartments protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR044870 | Bacterial microcompartment (BMC) circularly permuted domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily | |
| IPR020808 | Bacterial microcompartments protein, conserved site | Conserved Site | |
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR050575 | Bacterial microcompartment shell | Family | |
| IPR044872 | CcmK/CsoS1, bacterial microcompartment domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily | |
| IPR011238 | Bacterial microcompartment shell protein PduT | Family | |
| IPR000249 | Bacterial microcompartment domain | Domain | |
| IPR050575 | Bacterial microcompartment shell | Family | |
| IPR044872 | CcmK/CsoS1, bacterial microcompartment domain | Domain | |
| IPR037233 | CcmK-like superfamily | Homologous Superfamily |














