6N2E | pdb_00006n2e

Crystal Structure of Human Protocadherin-15 EC1-3 G16D N369D Q370N and Mouse Cadherin-23 EC1-2 T15E

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	V-set	e6n2eA1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (develop294)
B	V-set	e6n2eB1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (develop294)
D	V-set	e6n2eD1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (develop294)
C	V-set	e6n2eC1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.3430	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (utative)
B	2.60.40.3430	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
B	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (utative)
D	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (utative)
C	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain
A, B	PF18432	Extracellular Cadherin domain (ECD)	Extracellular Cadherin domain	This is an extracellular cadherin (EC) domain which can be found at the N-terminal region of Protocadherin 15 (Pcdh15). Pcdh15 features exceptionally long extracellular domains containing 11 ECs [1]. These repeats are structurally similar, but not id ...	This is an extracellular cadherin (EC) domain which can be found at the N-terminal region of Protocadherin 15 (Pcdh15). Pcdh15 features exceptionally long extracellular domains containing 11 ECs [1]. These repeats are structurally similar, but not identical in sequence, often featuring linkers with conserved calcium-binding sites that confer mechanical strength to them [2].	Domain
C, D	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protocadherin-15	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	multicellular organismal process multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance system process nervous system process sensory perception neuromuscular process equilibrioception neuromuscular process controlling balance sensory perception of sound multicellular organismal process multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance system process nervous system process sensory perception neuromuscular process equilibrioception neuromuscular process controlling balance sensory perception of sound sensory perception of mechanical stimulus cell adhesion cellular process developmental process ear development sensory organ development inner ear development animal organ development anatomical structure development cell-cell adhesion homophilic cell-cell adhesion sensory perception of light stimulus	cellular anatomical structure extracellular region synapse cell junction cell periphery plasma membrane membrane cell projection stereocilium actin-based cell projection organelle stereocilium bundle neuron projection cluster of actin-based cell projections cellular anatomical structure extracellular region synapse cell junction cell periphery plasma membrane membrane cell projection stereocilium actin-based cell projection organelle stereocilium bundle neuron projection cluster of actin-based cell projections plasma membrane bounded cell projection extracellular space membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium photoreceptor outer segment photoreceptor cell cilium
C, D	Cadherin-23	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding cadherin binding protein binding beta-catenin binding	developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation animal organ morphogenesis system development embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization behavior locomotory behavior sensory perception of light stimulus system process sensory perception nervous system process inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis regulation of cytosolic calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cell migration cell motility multicellular organismal-level homeostasis anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance neuromuscular process equilibrioception neuromuscular process controlling balance sensory perception of sound sensory perception of mechanical stimulus cell adhesion cell-cell adhesion homophilic cell-cell adhesion localization transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport calcium-dependent cell-cell adhesion	cellular anatomical structure apical part of cell photoreceptor inner segment cell projection stereocilium actin-based cell projection organelle stereocilium tip stereocilium bundle neuron projection cluster of actin-based cell projections plasma membrane bounded cell projection intracellular organelle centrosome cellular anatomical structure apical part of cell photoreceptor inner segment cell projection stereocilium actin-based cell projection organelle stereocilium tip stereocilium bundle neuron projection cluster of actin-based cell projections plasma membrane bounded cell projection intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cell periphery plasma membrane membrane protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane protein complex extrinsic component of membrane membrane-bounded organelle 9+2 non-motile cilium non-motile cilium cilium kinocilium photoreceptor ribbon synapse synapse cell junction ribbon synapse cochlear hair cell ribbon synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR056989	Protocadherin-15 domain	Domain
A, B	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, B	IPR020894	Cadherin conserved site	Conserved Site
A, B	IPR030718	Extracellular cadherin domain superfamily	Homologous Superfamily
A, B	IPR050971	Cadherin domain-containing protein	Family
A, B	IPR041149	Extracellular cadherin domain	Domain
A, B	IPR002126	Cadherin-like	Domain
C, D	IPR015919	Cadherin-like superfamily	Homologous Superfamily
C, D	IPR020894	Cadherin conserved site	Conserved Site
C, D	IPR002126	Cadherin-like	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q96QU1	Usher syndrome nonsyndromic genetic deafness Usher syndrome type 1F autosomal recessive nonsyndromic deafness 23 retinitis pigmentosa Usher syndrome type 3 Usher syndrome, type 1F cochlear disease Usher syndrome type 1D astrocytic tumor substance-related disorder cone-rod dystrophy non-small cell lung carcinoma pilocytic astrocytoma retinitis pigmentosa-deafness syndrome Usher syndrome nonsyndromic genetic deafness Usher syndrome type 1F autosomal recessive nonsyndromic deafness 23 retinitis pigmentosa Usher syndrome type 3 Usher syndrome, type 1F cochlear disease Usher syndrome type 1D astrocytic tumor substance-related disorder cone-rod dystrophy non-small cell lung carcinoma pilocytic astrocytoma retinitis pigmentosa-deafness syndrome substance dependence attention deficit hyperactivity disorder, inattentive type Usher syndrome type 1B Usher syndrome type 1G lung adenocarcinoma pituitary gland adenoma retinal degeneration substance abuse Usher syndrome type 2 drug dependence hearing loss disorder lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.