Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I | SCOP2B Superfamily | Ribosomal protein S7 | 8066011 | 3000799 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | GS N-terminal domain-like | 8053165 | 3000408 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052749 | 3000135 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052748 | 3001473 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052750 | 3000334 | SCOP2B (2022-06-29) |
| FA [auth f] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053452 | 3002190 | SCOP2B (2022-06-29) |
| EA [auth e] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063420 | 3000135 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063816 | 3001397 | SCOP2B (2022-06-29) |
| CA [auth c] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053146 | 3000068 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053137 | 3000068 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052724 | 3002138 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052726 | 3000135 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052965 | 3001284 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Homeodomain-like | 8052964 | 3000001 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052571 | 3000068 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053207 | 3002166 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | S13-like H2TH domain | 8100146 | 3000053 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | L30e-like | 8063972 | 3001739 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055711 | 3000034 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Ribosomal protein S10 | 8100154 | 3001336 | SCOP2B (2022-06-29) |
| M | SCOP2 Family | Translational machinery components | 8096271 | 4000951 | SCOP2 (2022-06-29) |
| M | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8096272 | 3000100 | SCOP2 (2022-06-29) |
| K | SCOP2B Superfamily | Ribosomal protein S8 | 8081977 | 3000709 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I | RRM_1 | e6okkI1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| H | RRM_1 | e6okkH1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| G | RRM_1 | e6okkG1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| F | RRM_1 | e6okkF1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| E | RRM_1 | e6okkE1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| D | RRM_1 | e6okkD1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| FA [auth f] | RRM_1 | e6okkf1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| EA [auth e] | RRM_1 | e6okke1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| DA [auth d] | RRM_1 | e6okkd1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| C | RRM_1 | e6okkC1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| CA [auth c] | RRM_1 | e6okkc1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| BA [auth b] | RRM_1 | e6okkb1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| AA [auth a] | RRM_1 | e6okka1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| Z | RRM_1 | e6okkZ1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| Y | RRM_1 | e6okkY1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| X | RRM_1 | e6okkX1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| W | RRM_1 | e6okkW1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| V | RRM_1 | e6okkV1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| U | RRM_1 | e6okkU1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| T | RRM_1 | e6okkT1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| B | RRM_1 | e6okkB1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| S | RRM_1 | e6okkS1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| R | RRM_1 | e6okkR1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| Q | RRM_1 | e6okkQ1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| P | RRM_1 | e6okkP1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| O | RRM_1 | e6okkO1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| N | RRM_1 | e6okkN1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| M | RRM_1 | e6okkM1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| L | RRM_1 | e6okkL1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| K | RRM_1 | e6okkK1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
| J | RRM_1 | e6okkJ1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains | T: HUP domains | F: RRM_1 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain | |
| PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family | |
| PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | ||
| PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | ||
| PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family | |
| PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family | |
| PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain | |
| PF00467 | KOW motif (KOW) | KOW motif | - | Family | |
| PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family | |
| PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | ||
| PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain | |
| PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family | |
| PF07650 | KH domain (KH_2) | KH domain | Domain | ||
| PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain | |
| PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family | |
| PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family | |
| PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | ||
| PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family | |
| PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | ||
| PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | ||
| PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family | |
| PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain | |
| PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain | |
| PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain | |
| PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family | |
| PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family | |
| PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | ||
| PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family | |
| PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |














