6QLV | pdb_00006qlv

Crystal structure of W200H UbiX in complex with a geranyl-FMN N5 adduct

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G	d6qlvg_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
A	d6qlva_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
B	d6qlvb_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
C	d6qlvc_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
D	d6qlvd_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
E	d6qlve_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
F	d6qlvf_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
H	d6qlvh_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
I	d6qlvi_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
J	d6qlvj_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
K	d6qlvk_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
L	d6qlvl_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Flavoprotein	e6qlvG1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
A	Flavoprotein	e6qlvA1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
B	Flavoprotein	e6qlvB1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
C	Flavoprotein	e6qlvC1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
D	Flavoprotein	e6qlvD1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
E	Flavoprotein	e6qlvE1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
F	Flavoprotein	e6qlvF1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
H	Flavoprotein	e6qlvH1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
I	Flavoprotein	e6qlvI1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
J	Flavoprotein	e6qlvJ1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
K	Flavoprotein	e6qlvK1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
L	Flavoprotein	e6qlvL1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
A	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
B	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
C	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
D	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
E	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
F	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
H	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
I	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
J	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
K	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
L	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02441	Flavoprotein (Flavoprotein)	Flavoprotein	This domain is found in diverse flavoprotein enzymes, including covering the whole length of the sequence of epidermin biosynthesis protein from Staphylococcus epidermidis (EpiD, Swiss:P30197), which has been shown to bind FMN [1]. This enzyme cataly ...	This domain is found in diverse flavoprotein enzymes, including covering the whole length of the sequence of epidermin biosynthesis protein from Staphylococcus epidermidis (EpiD, Swiss:P30197), which has been shown to bind FMN [1]. This enzyme catalyses the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance [2]. dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase Swiss:P33751 (EC:4.1.1.-) [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Flavin prenyltransferase UbiX	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity flavin prenyltransferase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding carboxy-lyase activity lyase activity carbon-carbon lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036551	Flavin prenyltransferase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003382	Flavoprotein	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004507	Flavin prenyltransferase UbiX-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.