Annotations: 6R4R

Cryo-EM Structure of the PI3-Kinase SH3 Domain Amyloid Fibril

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH3-domain	8041580	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Metallophos	e6r4rG1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
F	Metallophos	e6r4rF1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
E	Metallophos	e6r4rE1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
D	Metallophos	e6r4rD1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
C	Metallophos	e6r4rC1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
B	Metallophos	e6r4rB1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
A	Metallophos	e6r4rA1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Phosphatidylinositol 3-kinase regulatory subunit alpha	transmembrane receptor protein tyrosine kinase adaptor activity protein tyrosine kinase binding binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding molecular adaptor activity signaling adaptor activity protein binding signaling receptor complex adaptor activity kinase binding protein-macromolecule adaptor activity enzyme regulator activity transmembrane receptor protein tyrosine kinase adaptor activity protein tyrosine kinase binding binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding molecular adaptor activity signaling adaptor activity protein binding signaling receptor complex adaptor activity kinase binding protein-macromolecule adaptor activity enzyme regulator activity molecular function regulator activity 1-phosphatidylinositol-3-kinase regulator activity kinase regulator activity insulin receptor substrate binding insulin receptor binding GTPase regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity phosphatidylinositol 3-kinase binding enzyme-substrate adaptor activity phosphatidylinositol 3-kinase regulator activity phosphatidylinositol 3-kinase activator activity ErbB-3 class receptor binding identical protein binding insulin-like growth factor receptor binding	cellular homeostasis chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis intracellular chemical homeostasis intracellular glucose homeostasis regulation of protein stability biological regulation regulation of biological quality protein stabilization cellular response to stimulus regulation of biological process regulation of cellular process cellular homeostasis chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis intracellular chemical homeostasis intracellular glucose homeostasis regulation of protein stability biological regulation regulation of biological quality protein stabilization cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling intracellular signal transduction cell communication intracellular signaling cassette cellular process signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process positive regulation of protein localization to plasma membrane regulation of localization cellular localization regulation of protein localization positive regulation of biological process localization intracellular protein localization regulation of protein localization to membrane positive regulation of cellular process positive regulation of protein localization to cell periphery protein localization to cell periphery protein localization to plasma membrane positive regulation of protein localization to membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of protein localization to plasma membrane establishment of protein localization protein transport transport establishment of localization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion cell surface receptor signaling pathway insulin-like growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway nucleocytoplasmic transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of establishment of protein localization regulation of protein localization to nucleus positive regulation of protein transport intercellular transport import into nucleus regulation of protein import into nucleus establishment of localization in cell protein import into nucleus positive regulation of intracellular transport regulation of intracellular transport regulation of transport positive regulation of protein localization to nucleus regulation of establishment of protein localization positive regulation of protein import into nucleus intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport establishment of protein localization to organelle positive regulation of transport protein localization to organelle regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process RNA processing regulation of biosynthetic process RNA splicing regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process regulation of RNA splicing macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression positive regulation of gene expression regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of RNA splicing regulation of metabolic process cellular response to nitrogen compound response to peptide hormone insulin receptor signaling pathway cellular response to endogenous stimulus response to hormone cellular response to hormone stimulus response to endogenous stimulus response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical response to insulin cellular response to insulin stimulus import into cell hexose transmembrane transport regulation of D-glucose import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport positive regulation of D-glucose transmembrane transport hexose import across plasma membrane positive regulation of transmembrane transport positive regulation of D-glucose import across plasma membrane import across plasma membrane transmembrane transport regulation of transmembrane transport D-glucose import across plasma membrane D-glucose transmembrane transport regulation of D-glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport positive regulation of DNA-templated transcription DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription positive regulation of cell communication positive regulation of signal transduction regulation of cellular response to stress endoplasmic reticulum unfolded protein response regulation of response to endoplasmic reticulum stress regulation of signal transduction positive regulation of response to stimulus regulation of endoplasmic reticulum unfolded protein response positive regulation of response to endoplasmic reticulum stress cellular response to stress regulation of intracellular signal transduction response to stress regulation of response to stress positive regulation of endoplasmic reticulum unfolded protein response response to endoplasmic reticulum stress regulation of signaling cellular response to topologically incorrect protein positive regulation of intracellular signal transduction cellular response to unfolded protein response to unfolded protein regulation of response to stimulus response to topologically incorrect protein regulation of cell communication positive regulation of signaling	protein-containing complex catalytic complex membrane phosphatidylinositol 3-kinase complex, class I membrane protein complex transferase complex phosphatidylinositol 3-kinase complex, class IA phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups cellular anatomical structure extrinsic component of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure protein-containing complex catalytic complex membrane phosphatidylinositol 3-kinase complex, class I membrane protein complex transferase complex phosphatidylinositol 3-kinase complex, class IA phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups cellular anatomical structure extrinsic component of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR000980	SH2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR008936	Rho GTPase activation protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR035020	PI3K p85 subunit, C-terminal SH2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR035591	Phosphatidylinositol 3-kinase regulatory subunit alpha, SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR000198	Rho GTPase-activating protein domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR032498	PI3K regulatory subunit p85-related , inter-SH2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR001452	SH3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR035022	PI3K p85 subunit, N-terminal SH2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR044124	PIK3R1, inter-SH2 domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6R4R | pdb_00006r4r

Cryo-EM Structure of the PI3-Kinase SH3 Domain Amyloid Fibril

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage