6RFL

Structure of the complete Vaccinia DNA-dependent RNA polymerase complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	RNA_pol_Rpb2_6_3rd_2	e6rflB2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: RNA_pol_Rpb2_6_3rd_2	ECOD (1.6)
A [auth B]	RNA_pol_Rpb2_6_2nd_1	e6rflB6	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: RNA_pol_Rpb2_6_2nd_1	ECOD (1.6)
A [auth B]	RNA_pol_Rpb2_3	e6rflB1	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_3	ECOD (1.6)
A [auth B]	F_UNCLASSIFIED	e6rflB5	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth B]	RNA_pol_Rpb2_45_1	e6rflB4	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_45_1	ECOD (1.6)
A [auth B]	RNA_pol_Rpb2_7	e6rflB3	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_7	ECOD (1.6)
A [auth B]	F_UNCLASSIFIED	e6rflB7	A: a+b complex topology	X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)	T: inserted a+b domain in yeast RNA polymerase beta subunit	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth J]	UNK_F_TYPE	e6rflJ1	A: alpha arrays	X: HTH	H: RPB10 (From Topology)	T: RPB10	F: UNK_F_TYPE	ECOD (1.6)
G [auth L]	Pox_mRNA-cap	e6rflL1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Pox_mRNA-cap	ECOD (1.6)
H [auth O]	EUF07538	e6rflO2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: EUF07538	ECOD (1.6)
H [auth O]	Pox_ATPase-GT_C	e6rflO4	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: Pox_ATPase-GT_C	ECOD (1.6)
H [auth O]	Pox_ATPase-GT_N	e6rflO3	A: a+b complex topology	X: mRNA triphosphatase CET1-related (From Topology)	H: mRNA triphosphatase CET1-related (From Topology)	T: mRNA triphosphatase CET1-related	F: Pox_ATPase-GT_N	ECOD (1.6)
H [auth O]	Methyltransf_11_3	e6rflO1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth L]	3.40.50.11680	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Poxvirus mRNA capping enzyme, small subunit	CATH (utative)
H [auth O]	3.20.100.20	Alpha Beta	Alpha-Beta Barrel	mRNA Triphosphatase Cet1	Chain A	CATH (utative)
H [auth O]	3.30.470.140	Alpha Beta	2-Layer Sandwich	D-amino Acid Aminotransferase	Chain A, domain 1	CATH (utative)
H [auth O]	2.40.50.830	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (utative)
H [auth O]	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	DNA-dependent RNA polymerase subunit rpo132	-	-	-
J [auth K]	Transcription factor VETF 82kDa large subunit	-	-	-
K [auth U]	chr17.trna16-GlnTTG	-	-	-
L [auth A]	DNA-dependent RNA polymerase subunit rpo147	-	-	-
N [auth Y]	Nucleoside triphosphate phosphohydrolase-I	-	-	-
O [auth C]	DNA-directed RNA polymerase 35 kDa subunit	-	-	-
P [auth S]	DNA-directed RNA polymerase 30 kDa polypeptide	-	-	-
B [auth E]	DNA-directed RNA polymerase subunit	-	-	-
C [auth F]	DNA-directed RNA polymerase 19 kDa subunit	-	-	-
D [auth G]	DNA-dependent RNA polymerase subunit rpo18	-	-	-
E [auth I]	Putative H4L RNA polymerase-associated transcription factor RAP94	transcription regulator activity DNA-binding transcription factor activity	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	virion component
F [auth J]	DNA-dependent RNA polymerase subunit rpo7	-	-	-
G [auth L]	Small subunit of mRNA capping enzyme	-	-	-
H [auth O]	Large subunit of mRNA capping enzyme	-	-	-
I [auth R], M [auth Q]	Virion core protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth I]	IPR004974	RNA polymerase-associated transcription specificity factor Rap94	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
P [auth S]	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.