6SKF
Cryo-EM Structure of T. kodakarensis 70S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth Aj] | SCOP2 Family | Ribosomal protein S8 | 8099677 | 4002027 | SCOP2 (2021-05-27) |
J [auth Aj] | SCOP2 Superfamily | Ribosomal protein S8 | 8099678 | 3000709 | SCOP2 (2021-05-27) |
K [auth Ak] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8099630 | 3000433 | SCOP2B (2021-05-27) |
L [auth Al] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8099656 | 3000100 | SCOP2B (2021-05-27) |
M [auth Am] | SCOP2B Superfamily | Ribosomal protein S10 | 8099628 | 3001336 | SCOP2B (2021-05-27) |
N [auth An] | SCOP2B Superfamily | Translational machinery components | 8099662 | 3000571 | SCOP2B (2021-05-27) |
P [auth Ap] | SCOP2B Superfamily | S13-like H2TH domain | 8099660 | 3000053 | SCOP2B (2021-05-27) |
R [auth Ar] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8099676 | 3000068 | SCOP2B (2021-05-27) |
B [auth Ab] | SCOP2 Family | Ribosomal protein S2-like | 8099653 | 4003744 | SCOP2 (2021-05-27) |
B [auth Ab] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8099654 | 3001397 | SCOP2 (2021-05-27) |
T [auth At] | SCOP2B Superfamily | Rps17e-like | 8099602 | 3001852 | SCOP2B (2021-05-27) |
V [auth Av] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8099634 | 3000034 | SCOP2B (2021-05-27) |
W [auth Aw] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8099652 | 3000210 | SCOP2B (2021-05-27) |
X [auth Ax] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099624 | 3001320 | SCOP2B (2021-05-27) |
Y [auth Ay] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8099638 | 3000135 | SCOP2B (2021-05-27) |
DA [auth BD] | SCOP2B Superfamily | Translational proteins | 8099614 | 3000811 | SCOP2B (2021-05-27) |
EA [auth BE] | SCOP2B Superfamily | Ribosomal protein L4 | 8099610 | 3001146 | SCOP2B (2021-05-27) |
FA [auth BF] | SCOP2 Family | Ribosomal protein L5 | 8099673 | 4001498 | SCOP2 (2021-05-27) |
FA [auth BF] | SCOP2 Superfamily | RL5-like | 8099674 | 3001709 | SCOP2 (2021-05-27) |
HA [auth BH] | SCOP2B Superfamily | L30e-like | 8099636 | 3001739 | SCOP2B (2021-05-27) |
IA [auth BI] | SCOP2B Superfamily | L30e-like | 8099636 | 3001739 | SCOP2B (2021-05-27) |
JA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8099612 | 3000884 | SCOP2B (2021-05-27) |
KA [auth BK] | SCOP2B Superfamily | Ribosomal protein L13 | 8099666 | 3001134 | SCOP2B (2021-05-27) |
LA [auth BL] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8099670 | 3000433 | SCOP2B (2021-05-27) |
MA [auth BM] | SCOP2 Family | Ribosomal protein L14e | 8099657 | 4001669 | SCOP2 (2021-05-27) |
MA [auth BM] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099658 | 3000334 | SCOP2 (2021-05-27) |
NA [auth BN] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099658 | 3000334 | SCOP2B (2021-05-27) |
OA [auth BO] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099688 | 3001045 | SCOP2B (2021-05-27) |
D [auth Ad] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8099632 | 3002166 | SCOP2B (2021-05-27) |
PA [auth BP] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8099646 | 3000210 | SCOP2B (2021-05-27) |
QA [auth BQ] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8099683 | 4006591 | SCOP2 (2021-05-27) |
QA [auth BQ] | SCOP2 Superfamily | Translational machinery components | 8099684 | 3000571 | SCOP2 (2021-05-27) |
RA [auth BR] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099664 | 3001045 | SCOP2B (2021-05-27) |
SA [auth BS] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8099682 | 3000890 | SCOP2B (2021-05-27) |
TA [auth BT] | SCOP2B Superfamily | RplX-like | 8099640 | 3000673 | SCOP2B (2021-05-27) |
UA [auth BU] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8099647 | 4001752 | SCOP2 (2021-05-27) |
UA [auth BU] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099648 | 3000334 | SCOP2 (2021-05-27) |
VA [auth BV] | SCOP2B Superfamily | Ribosomal protein L22 | 8099606 | 3001078 | SCOP2B (2021-05-27) |
WA [auth BW] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8099604 | 3000210 | SCOP2B (2021-05-27) |
XA [auth BX] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099672 | 3000334 | SCOP2B (2021-05-27) |
ZA [auth BZ] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8099608 | 3000713 | SCOP2B (2021-05-27) |
AB [auth Ba] | SCOP2 Family | Ribosomal protein L30p/L7e | 8099685 | 4001360 | SCOP2 (2021-05-27) |
AB [auth Ba] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8099686 | 3001378 | SCOP2 (2021-05-27) |
BB [auth Bb] | SCOP2B Superfamily | L30e-like | 8099622 | 3001739 | SCOP2B (2021-05-27) |
CB [auth Bc] | SCOP2B Superfamily | Ribosomal protein L31e | 8099642 | 3000699 | SCOP2B (2021-05-27) |
DB [auth Bd] | SCOP2B Superfamily | Ribosomal protein L32e | 8099680 | 3000982 | SCOP2B (2021-05-27) |
EB [auth Be] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8099668 | 3002203 | SCOP2B (2021-05-27) |
FB [auth Bg] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099618 | 3001320 | SCOP2B (2021-05-27) |
GB [auth Bh] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099650 | 3001320 | SCOP2B (2021-05-27) |
HB [auth Bi] | SCOP2B Superfamily | Ribosomal protein L39e | 8099644 | 3001756 | SCOP2B (2021-05-27) |
KB [auth Bl] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8099626 | 3001320 | SCOP2B (2021-05-27) |
H [auth Ah] | SCOP2B Superfamily | GS N-terminal domain-like | 8099616 | 3000408 | SCOP2B (2021-05-27) |
I [auth Ai] | SCOP2B Superfamily | Ribosomal protein S7 | 8099620 | 3000799 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth Aj] | PF00410 | e6skfAj2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
J [auth Aj] | PF00410 | e6skfAj1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
K [auth Ak] | PF01201 | e6skfAk1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
L [auth Al] | PF00380 | e6skfAl1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
M [auth Am] | PF00338 | e6skfAm1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
N [auth An] | PF00411 | e6skfAn1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
O [auth Ao] | PF00164 | e6skfAo1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
P [auth Ap] | PF00416 | e6skfAp1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
Q [auth Aq] | PF08069 | e6skfAq2 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
Q [auth Aq] | PF00312 | e6skfAq1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
R [auth Ar] | PF00253 | e6skfAr1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
S [auth As] | PF00366 | e6skfAs1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
B [auth Ab] | PF00318 | e6skfAb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
T [auth At] | PF00833 | e6skfAt1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
U [auth Au] | PF00203 | e6skfAu1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
V [auth Av] | PF01090 | e6skfAv1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
W [auth Aw] | PF01282 | e6skfAw1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
X [auth Ax] | PF01667 | e6skfAx1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
Y [auth Ay] | PF01200 | e6skfAy1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
Z [auth Az] | PF07754 | e6skfAz1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF07754 | ECOD (1.6) |
CA [auth BC] | PF00181 | e6skfBC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
CA [auth BC] | PF03947 | e6skfBC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
C [auth Ac] | PF00189 | e6skfAc2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
C [auth Ac] | PF07650 | e6skfAc1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
DA [auth BD] | PF00297 | e6skfBD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
EA [auth BE] | PF00573 | e6skfBE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
FA [auth BF] | PF00281,PF00673 | e6skfBF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
GA [auth BG] | PF00347 | e6skfBG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
HA [auth BH] | PF01248 | e6skfBH1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
IA [auth BI] | PF01248 | e6skfBI1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
JA [auth BJ] | PF00252 | e6skfBJ1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
KA [auth BK] | PF00572 | e6skfBK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
LA [auth BL] | PF00238 | e6skfBL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
MA [auth BM] | F_UNCLASSIFIED | e6skfBM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
NA [auth BN] | F_UNCLASSIFIED | e6skfBN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
OA [auth BO] | PF00828 | e6skfBO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
D [auth Ad] | PF01015 | e6skfAd1 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
D [auth Ad] | PF01015 | e6skfAd2 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
PA [auth BP] | PF00827 | e6skfBP1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
QA [auth BQ] | PF17144 | e6skfBQ1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF17144 | ECOD (1.6) |
RA [auth BR] | PF17135 | e6skfBR1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
SA [auth BS] | PF01280 | e6skfBS2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
SA [auth BS] | PF01280 | e6skfBS1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
TA [auth BT] | PF01775 | e6skfBT1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
UA [auth BU] | PF01157 | e6skfBU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
VA [auth BV] | PF00237 | e6skfBV1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
WA [auth BW] | PF00276 | e6skfBW1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
XA [auth BX] | PF16906 | e6skfBX1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
YA [auth BY] | PF01246 | e6skfBY1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01246 | ECOD (1.6) |
E [auth Ae] | PF00163,PF01479 | e6skfAe1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
ZA [auth BZ] | PF00831 | e6skfBZ1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
AB [auth Ba] | PF00327 | e6skfBa1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
BB [auth Bb] | PF01248 | e6skfBb1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
CB [auth Bc] | PF01198 | e6skfBc1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
DB [auth Bd] | PF01655 | e6skfBd1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
EB [auth Be] | PF01199 | e6skfBe1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
FB [auth Bg] | PF01780 | e6skfBg1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
GB [auth Bh] | PF01907 | e6skfBh1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
HB [auth Bi] | PF00832 | e6skfBi1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
IB [auth Bj] | F_UNCLASSIFIED | e6skfBj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth Af] | PF00900 | e6skfAf2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
F [auth Af] | F_UNCLASSIFIED | e6skfAf1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth Af] | PF01479,PF08071 | e6skfAf3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF01479,PF08071 | ECOD (1.6) |
JB [auth Bk] | F_UNCLASSIFIED | e6skfBk1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: F_UNCLASSIFIED | ECOD (1.6) |
KB [auth Bl] | PF00935 | e6skfBl1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
H [auth Ah] | PF01092 | e6skfAh1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
I [auth Ai] | PF00177 | e6skfAi1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
AA [auth BA] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
BA [auth BB] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
CA [auth BC] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
CA [auth BC] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
CA [auth BC] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
DA [auth BD] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
EA [auth BE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
EA [auth BE] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
FA [auth BF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
FA [auth BF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
GA [auth BG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
GA [auth BG] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
HA [auth BH], IA [auth BI] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
HA [auth BH], IA [auth BI] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
HA [auth BH], IA [auth BI] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
JA [auth BJ] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
KA [auth BK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
LA [auth BL] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
LA [auth BL] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
OA [auth BO] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
PA [auth BP] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
QA [auth BQ] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
RA [auth BR] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
SA [auth BS] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
TA [auth BT] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
UA [auth BU] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
VA [auth BV] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
WA [auth BW] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
XA [auth BX] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
XA [auth BX] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
YA [auth BY] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
ZA [auth BZ] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |