6USF | pdb_00006usf

CryoEM structure of human alpha4beta2 nicotinic acetylcholine receptor with varenicline in complex with anti-BRIL synthetic antibody BAK5


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth L]Metallophos,Metallophos_Ce6usfL1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Metallophos,Metallophos_CECOD (develop294)
I [auth M]C1-sete6usfM1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (develop294)
H [auth K]C1-sete6usfK1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (develop294)
F [auth H]Metallophos,Metallophos_Ce6usfH1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Metallophos,Metallophos_CECOD (develop294)
BC1-sete6usfB1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (develop294)
EC1-sete6usfE1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (develop294)
CC1-sete6usfC1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (develop294)
DC1-sete6usfD1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (develop294)
AMetallophos,Metallophos_Ce6usfA1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Metallophos,Metallophos_CECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
G [auth L],
I [auth M]
sABs b562a, anti-BRIL L-KAPPA Homo sapiens (human) IGKV1-5*01, IGKV1-5*03, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202610-0)
F [auth H],
H [auth K]
sABs b562a, anti-BRIL VH-CH1 Homo sapiens (human) IGHV3-48*01, IGHV3-48*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G [auth L],
I [auth M]
Light ChainIGKV1 Kappachimera of soluble cytochrome b562 (bril) and neuronalacetylcholine receptor subunit alpha-4 SAbDab (2026-03-20)
F [auth H],
H [auth K]
Heavy ChainIGHV3 -chimera of soluble cytochrome b562 (bril) and neuronalacetylcholine receptor subunit alpha-4 SAbDab (2026-03-20)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, C, E
PF02932Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb)Neurotransmitter-gated ion-channel transmembrane region- Family
B, C, E
PF02931Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD)Neurotransmitter-gated ion-channel ligand binding domain- Family
A, D
PF02932Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb)Neurotransmitter-gated ion-channel transmembrane region- Family
A, D
PF02931Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD)Neurotransmitter-gated ion-channel ligand binding domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth L],
I [auth M]
Fab light chain---
F [auth H],
H [auth K]
Fab heavy chain---
B, C, E
Neuronal acetylcholine receptor subunit beta-2
A, D
chimera of soluble cytochrome b562 (BRIL) and neuronal acetylcholine receptor subunit alpha-4

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, C, E
PharosP17787
A, D
PharosP43681