6WFW | pdb_00006wfw

Crystal structure of Fab364 in complex with NPNA2 peptide from circumsporozoite protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth L]		e6wfwL1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: CSD	F:	ECOD (20:10:01)
B [auth H]		e6wfwH1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: CSD	F:	ECOD (20:10:01)
A [auth G]		e6wfwG1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: CSD	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
B [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
A [auth G]	3.10.20.10	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
C [auth L]	IMMUNOGLOBULIN G-BINDING PROTEIN G,H	L-KAPPA	-	IGKV1-503, IGKJ101, IGKC*01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	(L-KAPPA_VH-LINKER-CH1)	IMGT (202609-0)
B [auth H]	IMMUNOGLOBULIN G-BINDING PROTEIN G,H	(VH-LINKER-CH1)	-	IGHV3-3303, IGHV3-3306, IGHJ401, IGHJ402, IGHJ403, IGHJ501, IGHJ801, IGHG101, IGHG102, IGHG104, IGHG105, IGHG112, IGHG114, IGHG113, IGHG109, IGHG110, IGHG107, IGHG111	V-DOMAIN VH, C-DOMAIN CH1	IG	(L-KAPPA_VH-LINKER-CH1)	IMGT (202609-0)
A [auth G]	-	LINKER	-	-	-	TR	(LINKER)	IMGT (202609-0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth P]	NPNA2 peptide	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle entry into host cell by a symbiont-containing vacuole biological process involved in interaction with host biological process involved in symbiotic interaction	cell surface cellular anatomical structure membrane side of membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm
C [auth L]	Fab364 light chain	-	-	-
B [auth H]	Fab364 heavy chain	-	-	-
A [auth G]	Immunoglobulin G-binding protein G	protein-containing complex binding binding immunoglobulin binding IgG binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth P]	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
D [auth P]	IPR003067	Plasmodium circumsporozoite protein	Family
D [auth P]	IPR051860	Plasmodium Circumsporozoite Invasion Protein	Family
D [auth P]	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily
A [auth G]	IPR009063	Immunoglobulin/albumin-binding domain superfamily	Homologous Superfamily
A [auth G]	IPR005877	YSIRK Gram-positive signal peptide	Domain
A [auth G]	IPR000724	IgG-binding B	Domain
A [auth G]	IPR019950	M protein-type anchor motif	Conserved Site
A [auth G]	IPR035152	GA-like domain	Domain
A [auth G]	IPR019931	LPXTG cell wall anchor motif	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.