6WR2 | pdb_00006wr2

ClpP and ClpX IGF loop in ClpX-ClpP complex bound to ssrA tagged GFP


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
O [auth N]d6wr2n1 Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
O [auth N]d6wr2n2 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
P [auth H]d6wr2h_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Q [auth I]d6wr2i_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
R [auth J]d6wr2j_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
T [auth L]d6wr2l_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
N [auth M]d6wr2m_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
J [auth k]d6wr2k1 Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Clp protease, ClpP subunit automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
J [auth k]d6wr2k2 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth h]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
H [auth i]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
I [auth j]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
K [auth l]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
M [auth n]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
O [auth N]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
Q [auth I]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
R [auth J]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
S [auth K]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
T [auth L]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)
J [auth k]SCOP2B SuperfamilyClpP/crotonase 8034397 3000033 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth h]e6wr2h1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
H [auth i]e6wr2i1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
I [auth j]e6wr2j1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
K [auth l]e6wr2l1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
L [auth m]e6wr2m1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
M [auth n]e6wr2n1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
O [auth N]e6wr2N1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
P [auth H]e6wr2H1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
Q [auth I]e6wr2I1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
R [auth J]e6wr2J1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
S [auth K]e6wr2K1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
T [auth L]e6wr2L1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
N [auth M]e6wr2M1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)
J [auth k]e6wr2k1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Mab-21F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00574Clp protease (CLP_protease)Clp proteaseThe Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent Clp protease proteolytic subunit
A, B, C, D, E
ATP-dependent Clp protease ATP-binding subunit ClpX

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
IPR001907ATP-dependent Clp protease proteolytic subunitFamily
IPR018215ClpP, Ser active siteActive Site
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAFamily
IPR033135ClpP, histidine active siteActive Site
A, B, C, D, E
IPR046425Clp protease, ATP-binding subunit ClpX, bacteriaFamily
A, B, C, D, E
IPR004487Clp protease, ATP-binding subunit ClpXFamily
A, B, C, D, E
IPR003593AAA+ ATPase domainDomain
A, B, C, D, E
IPR010603ATP-dependent Clp protease ATP-binding subunit ClpX, zinc ribbon domainDomain
A, B, C, D, E
IPR003959ATPase, AAA-type, coreDomain
A, B, C, D, E
IPR019489Clp ATPase, C-terminalDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR050052ATP-dependent Clp protease ATP-binding subunit ClpXFamily
A, B, C, D, E
IPR059188ClpX-like, zinc ribbon domainDomain
A, B, C, D, E
IPR038366Zinc finger, ClpX C4-type superfamilyHomologous Superfamily