6X5K | pdb_00006x5k

Crystal structure of CODH/ACS with carbon monoxide bound to the A-cluster

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6x5ka_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
B	d6x5kb_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
C	d6x5kc_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
D	d6x5kd_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
E [auth M]	d6x5km_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
F [auth N]	d6x5kn_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
G [auth O]	d6x5ko_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
H [auth P]	d6x5kp_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GAF	e6x5kA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
B	GAF	e6x5kB1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
C	GAF	e6x5kC1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
D	GAF	e6x5kD1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
E [auth M]	GAF	e6x5kM1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
F [auth N]	GAF	e6x5kN1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
G [auth O]	GAF	e6x5kO1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)
H [auth P]	GAF	e6x5kP1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit beta	cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors hydroxylamine reductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding	metabolic process cellular process carbon fixation generation of precursor metabolites and energy response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	-
E [auth M], F [auth N], G [auth O], H [auth P]	Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha	anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process carbon fixation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
A, B, C, D	IPR004137	Hydroxylamine reductase/Ni-containing CO dehydrogenase	Family
A, B, C, D	IPR016101	CO dehydrogenase, alpha-bundle	Homologous Superfamily
A, B, C, D	IPR010047	Ni-containing CO dehydrogenase	Family
A, B, C, D	IPR011254	Prismane-like superfamily	Homologous Superfamily
E [auth M], F [auth N], G [auth O], H [auth P]	IPR041350	Carbon monoxide dehydrogenase subunit alpha ,N-terminal	Domain
E [auth M], F [auth N], G [auth O], H [auth P]	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
E [auth M], F [auth N], G [auth O], H [auth P]	IPR004461	CO dehydrogenase/acetyl-CoA synthase complex beta subunit	Family
E [auth M], F [auth N], G [auth O], H [auth P]	IPR045822	CO dehydrogenase/acetyl-CoA synthase complex beta subunit , C-terminal	Domain
E [auth M], F [auth N], G [auth O], H [auth P]	IPR038571	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase, domain 3 superfamily	Homologous Superfamily
E [auth M], F [auth N], G [auth O], H [auth P]	IPR011254	Prismane-like superfamily	Homologous Superfamily