6XJQ | pdb_00006xjq

Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth L]Sybindine6xjqL1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (develop294)
DPeptidase_M4,Peptidase_M4_Ce6xjqD1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_M4,Peptidase_M4_CECOD (develop294)
E [auth H]Peptidase_M4,Peptidase_M4_Ce6xjqH1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_M4,Peptidase_M4_CECOD (develop294)
CSybindine6xjqC1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (develop294)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D,
F [auth L]
Light ChainIGKV1 Kappaself-alkylating ribozyme (58-mer)SAbDab (2026-03-20)
C,
E [auth H]
Heavy ChainIGHV3 -self-alkylating ribozyme (58-mer)SAbDab (2026-03-20)