Annotations: 6YAI

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth F]	SCOP2B Superfamily	Subdomain of clathrin and coatomer appendage domain	8036006	3000382	SCOP2B (2022-06-29)
B [auth F]	SCOP2B Superfamily	Clathrin adaptor appendage domain	8055291	3002052	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth A]	PF00637	e6yaiA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00637	ECOD (1.6)
J [auth K]	PF00637	e6yaiK2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00637	ECOD (1.6)
L [auth H]	PF00637	e6yaiH1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00637	ECOD (1.6)
C	PF00637	e6yaiC2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00637	ECOD (1.6)
C	PF13838	e6yaiC1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF13838	ECOD (1.6)
B [auth F]	PF02883	e6yaiF2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF02883	ECOD (1.6)
B [auth F]	PF09066	e6yaiF1	A: a+b two layers	X: TBP-like	H: Subdomain of clathrin and coatomer appendage domain (From Topology)	T: Subdomain of clathrin and coatomer appendage domain	F: PF09066	ECOD (1.6)
G [auth D]	PF01086	e6yaiD1	A: extended segments	X: Clathrin light chain B (From Topology)	H: Clathrin light chain B (From Topology)	T: Clathrin light chain B	F: PF01086	ECOD (1.6)
H [auth O]	PF01086	e6yaiO1	A: extended segments	X: Clathrin light chain B (From Topology)	H: Clathrin light chain B (From Topology)	T: Clathrin light chain B	F: PF01086	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	PF09268	Clathrin, heavy-chain linker (Clathrin-link)	Clathrin, heavy-chain linker	-	Repeat
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	PF00637	Region in Clathrin and VPS (Clathrin)	Region in Clathrin and VPS	-	Repeat
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	PF13838	Clathrin-H-link (Clathrin_H_link)	Clathrin-H-link	-	Repeat
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	PF01394	Clathrin propeller repeat (Clathrin_propel)	Clathrin propeller repeat	-	Repeat
C	PF00637	Region in Clathrin and VPS (Clathrin)	Region in Clathrin and VPS	-	Repeat
C	PF13838	Clathrin-H-link (Clathrin_H_link)	Clathrin-H-link	-	Repeat
B [auth F]	PF09066	Beta2-adaptin appendage, C-terminal sub-domain (B2-adapt-app_C)	Beta2-adaptin appendage, C-terminal sub-domain	Members of this family adopt a structure consisting of a 5 stranded beta-sheet, flanked by one alpha helix on the outer side, and by two alpha helices on the inner side. This domain is required for binding to clathrin, and its subsequent polymerisati ...	Members of this family adopt a structure consisting of a 5 stranded beta-sheet, flanked by one alpha helix on the outer side, and by two alpha helices on the inner side. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) [1].	Domain
B [auth F]	PF02883	Adaptin C-terminal domain (Alpha_adaptinC2)	Adaptin C-terminal domain	Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and ...	Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and gamma adaptins.	Domain
G [auth D], H [auth O], M [auth I], N	PF01086	Clathrin light chain (Clathrin_lg_ch)	Clathrin light chain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	Clathrin heavy chain	clathrin binding protein binding binding clathrin light chain binding structural molecule activity	protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process intracellular protein transport vesicle-mediated transport	protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity coated membrane endomembrane system clathrin coat membrane coat cell periphery clathrin-coated pit cytoplasm protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity coated membrane endomembrane system clathrin coat membrane coat cell periphery clathrin-coated pit cytoplasm clathrin coat of coated pit clathrin complex membrane-bounded organelle vesicle coat intracellular vesicle transport vesicle membrane clathrin coat of trans-Golgi network vesicle intracellular organelle bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane cytoplasmic vesicle clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane transport vesicle Golgi apparatus intracellular membrane-bounded organelle coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane organelle membrane
C	Clathrin heavy chain	clathrin binding protein binding binding clathrin light chain binding structural molecule activity	protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process intracellular protein transport vesicle-mediated transport	protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity coated membrane endomembrane system clathrin coat membrane coat cell periphery clathrin-coated pit cytoplasm protein-containing complex intracellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity coated membrane endomembrane system clathrin coat membrane coat cell periphery clathrin-coated pit cytoplasm clathrin coat of coated pit clathrin complex membrane-bounded organelle vesicle coat intracellular vesicle transport vesicle membrane clathrin coat of trans-Golgi network vesicle intracellular organelle bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane cytoplasmic vesicle clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane transport vesicle Golgi apparatus intracellular membrane-bounded organelle coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane organelle membrane
B [auth F]	AP-2 complex subunit beta	clathrin binding protein binding binding signal sequence binding peptide binding	synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell cellular process endocytosis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell cellular process endocytosis developmental process heart development multicellular organismal process animal organ development ventricular septum development circulatory system development multicellular organism development cardiac septum development cardiac chamber development anatomical structure development cardiac ventricle development system development artery development aorta development vasculature development blood vessel development clathrin-dependent endocytosis receptor-mediated endocytosis receptor internalization postsynaptic neurotransmitter receptor internalization biological regulation protein-containing complex localization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis regulation of biological quality protein localization establishment of protein localization nitrogen compound transport organic substance transport intracellular transport protein transport cellular macromolecule localization macromolecule localization intracellular protein transport coronary vasculature development kidney development renal system development	membrane cellular anatomical entity protein-containing complex intracellular anatomical structure membrane protein complex coated membrane clathrin coat membrane coat AP-type membrane coat adaptor complex cytoplasm clathrin adaptor complex endosome membrane membrane-bounded organelle endolysosome membrane membrane cellular anatomical entity protein-containing complex intracellular anatomical structure membrane protein complex coated membrane clathrin coat membrane coat AP-type membrane coat adaptor complex cytoplasm clathrin adaptor complex endosome membrane membrane-bounded organelle endolysosome membrane intracellular vesicle lytic vacuole endomembrane system intracellular organelle bounding membrane of organelle endolysosome vesicle membrane cytoplasmic vesicle vesicle lysosome vacuolar membrane endosome vacuole intracellular membrane-bounded organelle lytic vacuole membrane cytoplasmic vesicle membrane organelle lysosomal membrane organelle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane clathrin-coated endocytic vesicle coated vesicle membrane cytosol cell periphery plasma membrane presynapse synapse cell junction vesicle coat AP-2 adaptor complex clathrin-coated pit clathrin vesicle coat clathrin coat of coated pit clathrin coat of endocytic vesicle plasma membrane protein complex glutamatergic synapse cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane postsynapse
G [auth D], H [auth O], M [auth I], N	Clathrin light chain	structural molecule activity	localization transport cellular process establishment of localization vesicle-mediated transport protein localization cellular localization establishment of protein localization nitrogen compound transport organic substance transport intracellular transport protein transport establishment of localization in cell cellular macromolecule localization localization transport cellular process establishment of localization vesicle-mediated transport protein localization cellular localization establishment of protein localization nitrogen compound transport organic substance transport intracellular transport protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization intracellular protein transport	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex coated membrane endomembrane system clathrin coat membrane coat cell periphery clathrin-coated pit clathrin coat of coated pit membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle intracellular organelle organelle trans-Golgi network vesicle coat intracellular vesicle transport vesicle membrane clathrin coat of trans-Golgi network vesicle bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane cytoplasmic vesicle clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane transport vesicle coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane cilium ciliary membrane plasma membrane bounded cell projection cell projection plasma membrane region cell projection membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	Repeat
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR016341	Clathrin, heavy chain	Family
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR015348	Clathrin, heavy chain, linker, core motif	Domain
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR016024	Armadillo-type fold	Homologous Superfamily
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR022365	Clathrin, heavy chain, propeller repeat	Repeat
A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], A [auth E], D [auth M], E [auth A], F [auth B], I [auth J], J [auth K], K [auth L], L [auth H]	IPR016025	Clathrin heavy chain, N-terminal	Homologous Superfamily
C	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	Repeat
C	IPR016341	Clathrin, heavy chain	Family
C	IPR015348	Clathrin, heavy chain, linker, core motif	Domain
C	IPR016024	Armadillo-type fold	Homologous Superfamily
C	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
C	IPR022365	Clathrin, heavy chain, propeller repeat	Repeat
C	IPR016025	Clathrin heavy chain, N-terminal	Homologous Superfamily
B [auth F]	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth F]	IPR013037	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	Homologous Superfamily
B [auth F]	IPR000225	Armadillo	Repeat
B [auth F]	IPR026739	AP complex subunit beta	Family
B [auth F]	IPR011989	Armadillo-like helical	Homologous Superfamily
B [auth F]	IPR012295	TBP domain superfamily	Homologous Superfamily
B [auth F]	IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Domain
B [auth F]	IPR015151	Beta-adaptin appendage, C-terminal subdomain	Domain
B [auth F]	IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Homologous Superfamily
B [auth F]	IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Domain
B [auth F]	IPR009028	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Homologous Superfamily
B [auth F]	IPR016342	AP-1/2/4 complex subunit beta	Family
G [auth D], H [auth O], M [auth I], N	IPR000996	Clathrin light chain	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth F]	Pharos: P63010	breast cancer esophageal adenocarcinoma oligodendroglioma chronic obstructive pulmonary disease head and neck cancer ovarian cancer Depressive Symptoms interstitial lung disease