Structure of DDB1-CRBN-pomalidomide complex bound to IKZF1(ZF2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2B (2022-06-29) |
| L | SCOP2 Family | Classic zinc finger, C2H2 | 8094161 | 4003583 | SCOP2 (2022-06-29) |
| L | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2 (2022-06-29) |
| F | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8094162 | 3001077 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I | e6h0fI1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| L | e6h0fL1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| F | e6h0fF1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| C | e6h0fC1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: FKBP_C | F: | ECOD (20:10:01) | |
| B | e6h0fB1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| H | e6h0fH2 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| K | e6h0fK1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| E | e6h0fE1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| J | e6h0fJ1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: FKBP_C | F: | ECOD (20:10:01) | |
| G | e6h0fG1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| D | e6h0fD1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) | |
| A | e6h0fA1 | A: L-aspartase middle domain-like | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like | T: Ribosomal_L1 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| J | 1.10.150.910 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (utative) |
| J | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
| G | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
| A | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00096 | Zinc finger, C2H2 type (zf-C2H2) | Zinc finger, C2H2 type | The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, an ... | Domain | |
| PF02190 | ATP-dependent protease La (LON) substrate-binding domain (LON_substr_bdg) | ATP-dependent protease La (LON) substrate-binding domain | - | Family | |
| PF03226 | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly (Yippee-Mis18) | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly | This family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of ... | Domain | |
| PF10433 | RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st) | RSE1/DDB1/CPSF1 first beta-propeller | - | Repeat | |
| PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR013087 | Zinc finger C2H2-type | Domain | |
| IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
| IPR050589 | Ikaros C2H2-type zinc-finger | Family | |
| IPR015947 | PUA-like superfamily | Homologous Superfamily | |
| IPR046336 | Lon protease, N-terminal domain superfamily | Homologous Superfamily | |
| IPR004910 | Yippee/Mis18/Cereblon | Domain | |
| IPR003111 | Lon protease, N-terminal domain | Domain | |
| IPR034750 | CULT domain | Domain | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR058543 | RSE1/DDB1/CPSF1, second beta-propeller | Domain | |
| IPR004871 | RSE1/DDB1/CPSF1, C-terminal | Domain | |
| IPR050358 | RSE1/DDB1/CPSF1 | Family | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR018846 | RSE1/DDB1/CPSF1, first beta-propeller | Domain |














