CryoEM structure of human alpha4beta2 nicotinic acetylcholine receptor with varenicline in complex with anti-BRIL synthetic antibody BAK5
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth M] | C1-set | e6usfM1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: C1-set | ECOD (develop294) |
| G [auth L] | Metallophos,Metallophos_C | e6usfL1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: Metallophos,Metallophos_C | ECOD (develop294) |
| H [auth K] | C1-set | e6usfK1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: C1-set | ECOD (develop294) |
| F [auth H] | Metallophos,Metallophos_C | e6usfH1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: Metallophos,Metallophos_C | ECOD (develop294) |
| E | C1-set | e6usfE1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: C1-set | ECOD (develop294) |
| C | C1-set | e6usfC1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: C1-set | ECOD (develop294) |
| B | C1-set | e6usfB1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: C1-set | ECOD (develop294) |
| D | C1-set | e6usfD1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: C1-set | ECOD (develop294) |
| A | Metallophos,Metallophos_C | e6usfA1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: Metallophos,Metallophos_C | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| I [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| G [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| H [auth K] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| F [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| E | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (utative) |
| C | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (utative) |
| B | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (utative) |
| D | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (utative) |
| A | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| G [auth L], I [auth M] | sABs b562a, anti-BRIL | L-KAPPA | Homo sapiens (human) | IGKV1-5*01, IGKV1-5*03, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202610-0) |
| F [auth H], H [auth K] | sABs b562a, anti-BRIL | VH-CH1 | Homo sapiens (human) | IGHV3-48*01, IGHV3-48*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202610-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| G [auth L], I [auth M] | Light Chain | IGKV1 | Kappa | chimera of soluble cytochrome b562 (bril) and neuronalacetylcholine receptor subunit alpha-4 | SAbDab (2026-03-20) |
| F [auth H], H [auth K] | Heavy Chain | IGHV3 | - | chimera of soluble cytochrome b562 (bril) and neuronalacetylcholine receptor subunit alpha-4 | SAbDab (2026-03-20) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02932 | Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb) | Neurotransmitter-gated ion-channel transmembrane region | - | Family | |
| PF02931 | Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD) | Neurotransmitter-gated ion-channel ligand binding domain | - | Family | |
| PF02932 | Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb) | Neurotransmitter-gated ion-channel transmembrane region | - | Family | |
| PF02931 | Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD) | Neurotransmitter-gated ion-channel ligand binding domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Pentameric ligand-gated ion channels | Ligand-gated ion channel of neurotransmitter receptors |














