6XCI | pdb_00006xci

Structure of NDM-1 in complex with macrocycle inhibitor NDM1i-3D

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Metallo-hydrolase/oxidoreductase	8097724	3001057	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Metallo-hydrolase/oxidoreductase	8097724	3001057	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	Raptor_N	e6xciA1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (develop294)
A [auth B]	Raptor_N	e6xciB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (utative)
A [auth B]	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth H]	Macrocycle NDM1i-3D	-	-	-
A [auth B], B [auth A]	BlaNDM-4_1_JQ348841	hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	antibiotic metabolic process catabolic process metabolic process cellular process antibiotic catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
A [auth B], B [auth A]	IPR058199	Metallo-beta-lactamase type 2/VIM/IMP-1	Family
A [auth B], B [auth A]	IPR001279	Metallo-beta-lactamase	Domain
A [auth B], B [auth A]	IPR050855	Metallo-beta-lactamase type 2-like	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C [auth H]	DCY
C [auth H]	DLY
C [auth H]	DPR
C [auth H]	HYP	Parent Component: PRO RESID: AA0030 PSI-MOD : 4-hydroxy-L-proline MOD:00039
C [auth H]	LWI	Parent Component: PHE RESID: AA0030
C [auth H]	NLE	Parent Component: LEU RESID: AA0030

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.