7AG7 | pdb_00007ag7

Crystal structure of SFP aldolase YihT from Salmonella enterica in complex with sulfate bound at the active site

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8040333	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e7ag7L1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
K		e7ag7K1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
J		e7ag7J1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
I		e7ag7I1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
H		e7ag7H1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
G		e7ag7G1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
F		e7ag7F1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
E		e7ag7E1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
D		e7ag7D1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: XRCC4	F:	ECOD (20:10:01)
C		e7ag7C1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
B		e7ag7B1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)
A		e7ag7A1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Radical_SAM	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01791	DeoC/LacD family aldolase (DeoC)	DeoC/LacD family aldolase	This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function, ...	This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function, see examples Swiss:Q57843 and Swiss:P76143. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Sulfofructosephosphate aldolase	6-deoxy-6-sulfofructose-1-phosphate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process 6-sulfoquinovose(1-) catabolic process organic acid catabolic process organic acid metabolic process sulfur compound catabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process small molecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050552	LacD aldolase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002915	DeoC/FbaB/LacD aldolase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017291	Sulfofructosephosphate aldolase, YihT	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.