7AIH

The Large subunit of the Kinetoplastid mitochondrial ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HA [auth BI]SCOP2 FamilyCyclophilin peptidylprolyl isomerase-like8103167 4000390 SCOP2 (2022-06-29)
HA [auth BI]SCOP2 SuperfamilyCyclophilin-like8103168 3000168 SCOP2 (2022-06-29)
UA [auth BH]SCOP2 FamilyCyclophilin peptidylprolyl isomerase-like8103169 4000390 SCOP2 (2022-06-29)
UA [auth BH]SCOP2 SuperfamilyCyclophilin-like8103170 3000168 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
QRibosomal_L28_1,Methyltransf_5_2nde7aihQ1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1,Methyltransf_5_2ndECOD (1.6)
TF_UNCLASSIFIEDe7aihT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
URibosomal_L33e7aihU1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
WF_UNCLASSIFIEDe7aihW1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: F_UNCLASSIFIEDECOD (1.6)
AA [auth BA]F_UNCLASSIFIEDe7aihBA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavoproteins/Phosphotyrosine protein phosphatases-likeT: Rhodanese/Cell cycle control phosphataseF: F_UNCLASSIFIEDECOD (1.6)
HA [auth BI]Pro_isomerasee7aihBI1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
MA [auth Ai]AMP-binding_3rde7aihAi2 A: beta barrelsX: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology)H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology)T: beta-barrel domain in acetyl-CoA synthetase-like proteinsF: AMP-binding_3rdECOD (1.6)
MA [auth Ai]AMP-binding_1ste7aihAi3 A: a/b three-layered sandwichesX: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)T: Rossmann-like domain in Acetyl-CoA synthetase-like proteinsF: AMP-binding_1stECOD (1.6)
MA [auth Ai]AMP-binding_2nde7aihAi1 A: a/b three-layered sandwichesX: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)T: Rossmann-like domain in Acetyl-CoA synthetase-like proteinsF: AMP-binding_2ndECOD (1.6)
UA [auth BH]Pro_isomerasee7aihBH1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
VA [auth Am]PPR_longe7aihAm1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PPR_longECOD (1.6)
YA [auth Ak]Hydrolase_4_1e7aihAk1 A: a/b three-layered sandwichesX: alpha/beta-Hydrolases (From Topology)H: alpha/beta-Hydrolases (From Topology)T: alpha/beta-HydrolasesF: Hydrolase_4_1ECOD (1.6)
AB [auth Ad]Img2e7aihAd1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
EB [auth As]F_UNCLASSIFIEDe7aihAs1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: F_UNCLASSIFIEDECOD (1.6)
GB [auth Ac]MRP-L46e7aihAc1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
FRibosomal_L13e7aihF1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
NB [auth BO]Ribosomal_L14e7aihBO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
OB [auth BG]F_UNCLASSIFIEDe7aihBG1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
HRibosomal_L16e7aihH1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
HA [auth BI]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
LA [auth Ab]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
MA [auth Ai]PF00501AMP-binding enzyme (AMP-binding)AMP-binding enzyme- Family
UA [auth BH]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
VA [auth Am]PF13041PPR repeat family (PPR_2)PPR repeat family- Repeat
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
GB [auth Ac]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
LB [auth Ax]PF00412LIM domain (LIM)LIM domainThis family represents two copies of the LIM structural domain.Domain
MB [auth BL]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
NB [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ribosomal protein L3-like protein
bL19m- -
bL20
bL21m
uL22m
uL23m
uL24m
bL27m- -
bL28m -
uL29m
uL30m- -
uL4m
bL32m- -
bL33m- -
bL35m- - -
bL36m- - -
mL38- - -
mL40- -
mL41- - -
AA [auth BA]mL94- - -
BA [auth UA]UA---
CA [auth BB]mL95- - -
RIBOSOMAL_L9 domain-containing protein- -
DA [auth Aw]mL89- - -
EA [auth Bj]bL31m- - -
FA [auth An]mL76- - -
GA [auth Al]mL74- - -
HA [auth BI]Peptidyl-prolyl cis-trans isomerase
IA [auth Az]mL93- - -
JA [auth At]mL86- -
KA [auth BC]mL96- - -
LA [auth Ab]L51_S25_CI-B8 domain-containing protein
MA [auth Ai]mL69 -
uL10m- - -
NA [auth Ap]mL80- - -
OA [auth Au]mL87- - -
PA [auth Aa]mL42- - -
QA [auth Ao]mL79- - -
RA [auth BM]mL70- -
SA [auth Ar]mL84- - -
TA [auth Aj]mL72- - -
UA [auth BH]Peptidyl-prolyl cis-trans isomerase
VA [auth Am]mL75 -
WA [auth Aq]mL82- - -
Putative ribosomal protein L11
XA [auth BE]mL98- -
YA [auth Ak]mL73- -
ZA [auth BP]mL52,mL52- - -
AB [auth Ad]mL49- - -
BB [auth BF]mL99- - -
CB [auth Av]mL88- - -
DB [auth Af]mL63- - -
EB [auth As]mL85- - -
FB [auth Ae]mL53- - -
GB [auth Ac]MRP-L46 domain-containing protein -
50S ribosomal protein L13-like protein
HB [auth Ah]mL68- - -
IB [auth BD]mL97- -
JB [auth Ay]C2H2-type domain-containing protein- - -
KB [auth Ag]mL54/69- - -
LB [auth Ax]LIM zinc-binding domain-containing protein - -
MB [auth BL]Putative ribosomal protein L2
NB [auth BO]Putative ribosomal protein L14
OB [auth BG]mL100- - -
PB [auth UB]UB---
QB [auth UC]UC---
Ribosomal_L18e/L15P domain-containing protein
RB [auth UD]UD---
SB [auth 1]Ribosomal RNA---
Ribosomal_L16 domain-containing protein
Putative 50S ribosomal protein L17

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR026569Large ribosomal subunit protein bL28Family
IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
IPR036610PEBP-like superfamilyHomologous Superfamily
IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
HA [auth BI]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
HA [auth BI]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
LA [auth Ab]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
LA [auth Ab]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
LA [auth Ab]IPR039927Large ribosomal subunit protein mL43Family
MA [auth Ai]IPR000873AMP-dependent synthetase/ligase domainDomain
TA [auth Aj]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
UA [auth BH]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
UA [auth BH]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
UA [auth BH]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
VA [auth Am]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
VA [auth Am]IPR002885Pentatricopeptide repeatRepeat
IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
IPR000911Ribosomal protein uL11Family
IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
YA [auth Ak]IPR029058Alpha/Beta hydrolase foldHomologous Superfamily
GB [auth Ac]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
GB [auth Ac]IPR040008Large ribosomal subunit protein mL46Family
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
JB [auth Ay]IPR013087Zinc finger C2H2-typeDomain
JB [auth Ay]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
LB [auth Ax]IPR001781Zinc finger, LIM-typeDomain
MB [auth BL]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MB [auth BL]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MB [auth BL]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MB [auth BL]IPR002171Large ribosomal subunit protein uL2Family
NB [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
NB [auth BO]IPR000218Large ribosomal subunit protein uL14Family
IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IPR000456Large ribosomal subunit protein bL17Family