7ARD | pdb_00007ard

Cryo-EM structure of Polytomella Complex-I (complete composition)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BDynamin_Ne7ardB1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
CDynamin_Ne7ardC1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
DGlyco_transf_41e7ardD1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.2)
EDynamin_Ne7ardE1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
FDynamin_Ne7ardF1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
GDynamin_Ne7ardG1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
HDynamin_Ne7ardH1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
INDUS4e7ardI1 A: beta barrelsX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: NDUS4ECOD (v294.2)
JDynamin_Ne7ardJ1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
KDynamin_Ne7ardK1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
LDynamin_Ne7ardL1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
MDynamin_Ne7ardM1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
NDynamin_Ne7ardN1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
ODynamin_Ne7ardO1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
PDynamin_Ne7ardP1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
QNDUS4e7ardQ1 A: beta barrelsX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: NDUS4ECOD (v294.2)
SDynamin_Ne7ardS1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
TDynamin_Ne7ardT1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
UDynamin_Ne7ardU1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
WDynamin_Ne7ardW1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
XDynamin_Ne7ardX1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
ZDynamin_Ne7ardZ1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
AA [auth a]Dynamin_Ne7arda1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)
EA [auth e]Dynamin_Ne7arde1 A: beta barrelsX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_NECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.12280 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (utative)
D1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
P3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (utative)
XA [auth y]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (utative)
YA [auth z]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ND3---
PSST---
ND9---
ND7---
24 kDa---
51 kDa---
75 kDa---
ND1---
TYKY---
ND6---
ND4L---
ND5---
ND4---
ND2---
C1-FDX---
39 kDa---
18 kDa---
13 kDa---
B8---
SDAP1---
SDAP2---
B13---
B14---
PGIV---
B14.7---
B16.6---
AA [auth a]MWFE---
BA [auth b]B9---
CA [auth c]KFYI---
DA [auth d]B14.5b---
EA [auth e]15 kDa---
FA [auth f]MNLL---
GA [auth g]ESSS---
HA [auth h]NUOP4---
IA [auth i]NUOP5---
JA [auth j]AGGG---
KA [auth k]B12---
LA [auth l]ASHI---
MA [auth m]B15---
NA [auth n]Complex I-B22-
OA [auth o]B18---
PA [auth p]PDSW---
QA [auth q]B17.2---
RA [auth r]B14.5a---
SA [auth s]NUOP7---
TA [auth t]NUOP8---
UA [auth u]unknown---
VA [auth w]unknown---
WA [auth x]CAL---
XA [auth y]CA2---
YA [auth z]CA3---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
NA [auth n]IPR033034NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9Family
NA [auth n]IPR008011Complex 1 LYR protein domainDomain
NA [auth n]IPR045292NDUFB9, LYR domainDomain

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicElectron transport chain complex I (NADH dehydrogenase) and supercomplexesH+ or Na+ translocating NADH dehydrogenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALElectron Transport Chain Complexes: Complex IMitochondrial Complex I, complete composition