7ELL | pdb_00007ell

In situ structure of capping enzyme lambda2, penetration protein mu1 of mammalian reovirus capsid asymmetric unit.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
R [auth i]	SCOP2 Family	Reovirus mu1 protein-like	8105400	4007739	SCOP2 (2022-06-29)
R [auth i]	SCOP2 Superfamily	Reovirus mu1 protein-like	8105401	3002506	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth K]	Reovirus_L2_MT2	e7ellK1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
U [auth K]	G-gamma	e7ellK4	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: G-gamma	ECOD (develop294)
T [auth j]	Reovirus_L2_MT2	e7ellj1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
R [auth i]	Reovirus_L2_MT2	e7elli1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
P [auth h]	Reovirus_L2_MT2	e7ellh1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
N [auth g]	Reovirus_L2_MT2	e7ellg1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
L [auth f]	Reovirus_L2_MT2	e7ellf1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
J [auth e]	Reovirus_L2_MT2	e7elle1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
H [auth d]	Reovirus_L2_MT2	e7elld1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
F [auth c]	Reovirus_L2_MT2	e7ellc1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
D [auth b]	Reovirus_L2_MT2	e7ellb1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
B [auth a]	Reovirus_L2_MT2	e7ella1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Reovirus_L2_MT2	ECOD (develop294)
K [auth F]	Glyco_transf_41	e7ellF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
S [auth J]	Glyco_transf_41	e7ellJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
Q [auth I]	Glyco_transf_41	e7ellI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
O [auth H]	Glyco_transf_41	e7ellH1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
M [auth G]	Glyco_transf_41	e7ellG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
I [auth E]	Glyco_transf_41	e7ellE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
G [auth D]	Glyco_transf_41	e7ellD1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
E [auth C]	Glyco_transf_41	e7ellC1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
C [auth B]	Glyco_transf_41	e7ellB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (develop294)
A	Cation_ATPase	e7ellA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cation_ATPase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T [auth j]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
T [auth j]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
T [auth j]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
R [auth i]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
R [auth i]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
R [auth i]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
P [auth h]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
P [auth h]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
P [auth h]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
N [auth g]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
N [auth g]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
N [auth g]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
L [auth f]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
L [auth f]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
L [auth f]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
J [auth e]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
J [auth e]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
J [auth e]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
H [auth d]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
H [auth d]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
H [auth d]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
F [auth c]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
F [auth c]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
F [auth c]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
D [auth b]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
D [auth b]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)
B [auth a]	3.90.1370.10	Alpha Beta	Alpha-Beta Complex	Protein mu-1, chain B, domain 1	Protein mu-1, chain B, domain 1	CATH (utative)
B [auth a]	1.10.2040.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 2	Protein mu-1, chain B, domain 2	CATH (utative)
B [auth a]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
U [auth K]	mRNA (guanine-N(7)-)-methyltransferase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding guanylyltransferase activity mRNA guanylyltransferase activity RNA guanylyltransferase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid transferase activity catalytic activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups S-adenosylmethionine-dependent methyltransferase activity mRNA 5'-cap (guanine-N7-)-methyltransferase activity N-methyltransferase activity methyltransferase activity mRNA methyltransferase activity guanyl nucleotide binding GTP binding guanyl ribonucleotide binding	-	viral capsid icosahedral viral capsid virion component viral outer capsid
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	Mu1	host cell surface binding binding	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part viral capsid icosahedral viral capsid virion component viral outer capsid host intracellular membrane-bounded organelle host intracellular part host cell endoplasmic reticulum host cell cytoplasm part host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part viral capsid icosahedral viral capsid virion component viral outer capsid host intracellular membrane-bounded organelle host intracellular part host cell endoplasmic reticulum host cell cytoplasm part host intracellular organelle host cell cytoplasm host intracellular region host cell mitochondrion
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	Mu1	host cell surface binding binding	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part viral capsid icosahedral viral capsid virion component viral outer capsid host intracellular membrane-bounded organelle host intracellular part host cell endoplasmic reticulum host cell cytoplasm part host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part viral capsid icosahedral viral capsid virion component viral outer capsid host intracellular membrane-bounded organelle host intracellular part host cell endoplasmic reticulum host cell cytoplasm part host intracellular organelle host cell cytoplasm host intracellular region host cell mitochondrion

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
U [auth K]	IPR048601	Reovirus core-spike protein lambda-2-like, GTase domain	Domain
U [auth K]	IPR048602	Reovirus core-spike protein lambda-2-like, 7th domain	Domain
U [auth K]	IPR048604	Reovirus core-spike protein lambda-2-like, ferredoxin-like domain	Domain
U [auth K]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
U [auth K]	IPR048598	Reovirus core-spike protein lambda-2-like, first methyltransferase domain	Domain
U [auth K]	IPR048596	Reovirus core-spike protein lambda-2-like, N-terminal domain	Domain
U [auth K]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
U [auth K]	IPR048603	Reovirus core-spike protein lambda-2-like, 6th domain	Domain
U [auth K]	IPR010311	Reovirus core-spike lambda-2	Family
U [auth K]	IPR048597	Reovirus core-spike protein lambda-2-like, second methyltransferase domain	Domain
U [auth K]	IPR048294	Reovirus core-spike protein lambda-2-like, C-terminal domain	Domain
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	IPR015961	Mu1 membrane penetration protein, domain I	Homologous Superfamily
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	IPR015960	Mu1 membrane penetration protein, domain IV	Homologous Superfamily
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	IPR036256	Mu1/VP4 superfamily	Homologous Superfamily
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	IPR009113	Outer capsid protein Mu1/VP4	Family
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	IPR015962	Mu1 membrane penetration protein, domain II	Homologous Superfamily
B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], B [auth a], D [auth b], F [auth c], H [auth d], J [auth e], L [auth f], N [auth g], P [auth h], R [auth i], T [auth j]	IPR044937	Mu1 membrane penetration protein, domain III	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	IPR015961	Mu1 membrane penetration protein, domain I	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	IPR015960	Mu1 membrane penetration protein, domain IV	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	IPR036256	Mu1/VP4 superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	IPR009113	Outer capsid protein Mu1/VP4	Family
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	IPR015962	Mu1 membrane penetration protein, domain II	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J]	IPR044937	Mu1 membrane penetration protein, domain III	Homologous Superfamily