7LYV | pdb_00007lyv

Crystal structure of the HCMV pentamer-specific antibody 1-103

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth F]DHDPSe7lyvF1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (develop294)
F [auth B]DHDPSe7lyvB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (develop294)
DDHDPSe7lyvD1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (develop294)
B [auth L]F-actin_cap_Ae7lyvL1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: F-actin_cap_AECOD (develop294)
G [auth E]DHDPSe7lyvE1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (develop294)
E [auth A]DHDPSe7lyvA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (develop294)
CDHDPSe7lyvC1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: DHDPSECOD (develop294)
A [auth H]F-actin_cap_Ae7lyvH1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: F-actin_cap_AECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
F [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
E [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth L],
D,
F [auth B],
H [auth F]		Light ChainIGKV1 Kappa-SAbDab (2026-03-20)
A [auth H],
C,
E [auth A],
G [auth E]		Heavy ChainIGHV4 --SAbDab (2026-03-20)

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth H],
C,
E [auth A],
G [auth E]		PCA Parent Component: GLN

RESID:  AA0031

PSI-MOD :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420