7PET | pdb_00007pet

The 4x177 nucleosome array containing H1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth m]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
O [auth g]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
T [auth M]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
X [auth Q]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
K [auth c]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
FA [auth q]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
GA [auth r]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
L [auth d]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
P [auth h]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
U [auth N]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
CA [auth n]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
HA [auth s]SCOP2B SuperfamilyWinged helix DNA-binding domain 8102134 3000034 SCOP2B (2022-06-29)
Q [auth u]SCOP2B SuperfamilyWinged helix DNA-binding domain 8102134 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
J [auth b]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
N [auth f]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
S [auth L]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
W [auth P]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
AA [auth l]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
DA [auth o]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
I [auth a]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
M [auth e]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
R [auth K]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
V [auth O]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
Z [auth k]SCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth m]e7petm1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Ge7petG1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
O [auth g]e7petg1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
T [auth M]e7petM1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
X [auth Q]e7petQ1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
K [auth c]e7petc1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
FA [auth q]e7petq1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Ce7petC1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
De7petD1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
GA [auth r]e7petr1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
L [auth d]e7petd1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
P [auth h]e7peth1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Y [auth R]e7petR1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
U [auth N]e7petN1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
He7petH1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
CA [auth n]e7petn1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
HA [auth s]e7pets1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Q [auth u]e7petu1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Be7petB1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
EA [auth p]e7petp1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
J [auth b]e7petb1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
N [auth f]e7petf1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
S [auth L]e7petL1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
W [auth P]e7petP1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Fe7petF1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
AA [auth l]e7petl1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Ae7petA1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
DA [auth o]e7peto1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
I [auth a]e7peta1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
M [auth e]e7pete1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
R [auth K]e7petK1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
V [auth O]e7petO1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Z [auth k]e7petk1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Ee7petE1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H2A type 1-B/E
Histone H2B type 1-K
IA [auth I]DNA (702-MER)---
JA [auth J]DNA (702-MER)---
HA [auth s],
Q [auth u]
Histone H1.4
Histone H4
Histone H3.2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009072Histone-foldHomologous Superfamily
IPR002119Histone H2AFamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR000558Histone H2BFamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR055333Histone H2B, conserved siteConserved Site
HA [auth s],
Q [auth u]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
HA [auth s],
Q [auth u]
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
HA [auth s],
Q [auth u]
IPR005818Linker histone H1/H5, domain H15Domain
HA [auth s],
Q [auth u]
IPR005819Linker histone H1/H5Family
IPR009072Histone-foldHomologous Superfamily
IPR035425CENP-T/Histone H4, histone foldDomain
IPR001951Histone H4Family
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP04908
PharosO60814
HA [auth s],
Q [auth u]
PharosP10412
PharosP62805
PharosQ71DI3