Core human replisome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth A] | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104148 | 3002834 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | PriA/YqbF domain | 8033897 | 3000274 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | GINS helical bundle-like | 8033896 | 3001594 | SCOP2B (2022-06-29) |
| L [auth F] | SCOP2B Superfamily | GINS helical bundle-like | 8035318 | 3001594 | SCOP2B (2022-06-29) |
| L [auth F] | SCOP2B Superfamily | PriA/YqbF domain | 8035319 | 3000274 | SCOP2B (2022-06-29) |
| K [auth E] | SCOP2B Superfamily | GINS helical bundle-like | 8033892 | 3001594 | SCOP2B (2022-06-29) |
| K [auth E] | SCOP2B Superfamily | PriA/YqbF domain | 8033893 | 3000274 | SCOP2B (2022-06-29) |
| J [auth D] | SCOP2B Superfamily | GINS helical bundle-like | 8033891 | 3001594 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth C] | e7pfoC1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| H [auth B] | e7pfoB01 | A: Rossmann-like | X: Rossmann-related | H: FAD/NAD(P)-binding domain | T: | F: | ECOD (20:10:01) | |
| F [auth 7] | e7pfo71 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| E [auth 6] | e7pfo61 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| D [auth 5] | e7pfo51 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| C [auth 4] | e7pfo41 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| B [auth 3] | e7pfo31 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: MlaD | F: | ECOD (20:10:01) | |
| P [auth J] | e7pfoJ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: DUF1870 | F: | ECOD (20:10:01) | |
| O [auth I] | e7pfoI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| N [auth H] | e7pfoH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| M [auth G] | e7pfoG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| L [auth F] | e7pfoF1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| K [auth E] | e7pfoE1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| J [auth D] | e7pfoD1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Arm, ARM_PUB | F: | ECOD (20:10:01) | |
| A [auth 2] | e7pfo21 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth C] | PF02724 | CDC45 (CDC45) | CDC45 | - | Family |
| H [auth B] | PF23250 | Zinc finger domain of DNA polymerase-epsilon (zf_DPOE_2) | Zinc finger domain of DNA polymerase-epsilon | This is a CysA-type zinc finger domain found in human DNA polymerase epsilon catalytic subunit A (DPOE, also known as POLE), the catalytic component of the DNA polymerase epsilon complex. It is often found associated with Pfam:PF22912. | Domain |
| H [auth B] | PF22912 | Zinc finger domain of DNA polymerase-epsilon (zf-DPOE) | Zinc finger domain of DNA polymerase-epsilon | This zinc finger domain is found in the epsilon subunit of DNA polymerase. | Domain |
| H [auth B] | PF08490 | Domain of unknown function (DUF1744) (DUF1744) | Domain of unknown function (DUF1744) | This domain is found at the C-terminal of the epsilon catalytic subunit of DNA polymerase. It is found C terminal to Pfam:PF03104 and Pfam:PF00136. | Domain |
| G [auth A] | PF12213 | DNA polymerases epsilon N terminal (Dpoe2NT) | DNA polymerases epsilon N terminal | This domain is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with Pfam:PF04042. There is a single completely conserved residue F that may be functionally important. This domain is the N termina ... | Domain |
| G [auth A] | PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family |
| F [auth 7] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
| F [auth 7] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | Domain | |
| F [auth 7] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
| F [auth 7] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
| E [auth 6] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
| E [auth 6] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | Domain | |
| E [auth 6] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
| E [auth 6] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
| D [auth 5] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
| D [auth 5] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | Domain | |
| D [auth 5] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
| D [auth 5] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
| C [auth 4] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | Domain | |
| C [auth 4] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
| C [auth 4] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
| C [auth 4] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
| C [auth 4] | PF21128 | MCM4, winged helix domain (WHD_MCM4) | MCM4, winged helix domain | DNA replication licensing factor MCM4 is a component of the MCM2-MCM7 complex which consists of six sequence-related AAA+ type ATPases/helicases that form a heterohexameric ring essential for 'once per cell cycle' DNA replication initiation and elong ... | Domain |
| B [auth 3] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
| B [auth 3] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
| B [auth 3] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
| R [auth L] | PF07962 | Replication Fork Protection Component Swi3 (Swi3) | Replication Fork Protection Component Swi3 | - | Family |
| Q [auth K] | PF04821 | Timeless protein (TIMELESS) | Timeless protein | - | Family |
| N [auth H], O [auth I], P [auth J] | PF12341 | Minichromosome loss protein, Mcl1, middle region (Mcl1_mid) | Minichromosome loss protein, Mcl1, middle region | - | Repeat |
| N [auth H], O [auth I], P [auth J] | PF20946 | DNA polymerase alpha-binding protein Ctf4, C-terminal domain (Ctf4_C) | DNA polymerase alpha-binding protein Ctf4, C-terminal domain | This domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the ... | Domain |
| M [auth G] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
| M [auth G] | PF16922 | DNA replication complex GINS protein SLD5 C-terminus (SLD5_C) | DNA replication complex GINS protein SLD5 C-terminus | The C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. | Domain |
| L [auth F] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
| L [auth F] | PF22466 | PSF3 N-terminal domain (PSF3_N) | PSF3 N-terminal domain | This entry represents the GINS/PriA/YqbF domain, which is found in the N-terminal region of the GINS complex protein. The GINS complex is crucial for the establishment of DNA replication forks and replisome progression in eukaryotes. The crystal stru ... | Domain |
| K [auth E] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
| K [auth E] | PF25005 | PSF2 N-terminal domain (PSF2_N) | PSF2 N-terminal domain | This domain is found N-terminal in the human DNA replication complex GINS protein PSF2 and related proteins. PSF2 is an essential component of of the GINS complex, a complex that plays an essential role in the initiation of DNA replication, and progr ... | Domain |
| J [auth D] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
| J [auth D] | PF24997 | PSF1 C-terminal domain (PSF1_C) | PSF1 C-terminal domain | This domain is found C-terminal in the human DNA replication complex GINS protein PSF1 and related proteins. PSF1 is required for correct functioning of the GINS complex, a complex that plays an essential role in the initiation of DNA replication, an ... | Domain |
| A [auth 2] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | Domain | |
| A [auth 2] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
| A [auth 2] | PF23669 | DNA replication licensing factor MCM2-like, winged-helix domain (WHD_MCM2) | DNA replication licensing factor MCM2-like, winged-helix domain | This is the winged-helix (WH) domain found at the C-terminal end of human DNA replication licensing factor MCM2 and similar eukaryotic proteins. MCM2 is a component of the MCM2-7 complex, the replicative helicase essential for DNA replication initiat ... | Domain |
| A [auth 2] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
| A [auth 2] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |














