7PIQ

70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth G]	SCOP2B Superfamily	Ribosomal protein S8	8107654	3000709	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8107610	3000100	SCOP2B (2022-06-29)
L [auth I]	SCOP2B Superfamily	Ribosomal protein S10	8107628	3001336	SCOP2B (2022-06-29)
M [auth J]	SCOP2B Superfamily	Translational machinery components	8107646	3000571	SCOP2B (2022-06-29)
N [auth K]	SCOP2B Superfamily	Nucleic acid-binding proteins	8107620	3000135	SCOP2B (2022-06-29)
O [auth L]	SCOP2B Superfamily	S13-like H2TH domain	8107648	3000053	SCOP2B (2022-06-29)
P [auth M]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8107656	3000068	SCOP2B (2022-06-29)
Q [auth N]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8107606	3001284	SCOP2B (2022-06-29)
S [auth P]	SCOP2B Superfamily	Nucleic acid-binding proteins	8107664	3000135	SCOP2B (2022-06-29)
B [auth 1]	SCOP2B Superfamily	L35p-like	8107614	3000790	SCOP2B (2022-06-29)
U [auth R]	SCOP2B Superfamily	Ribosomal protein S19	8107622	3000686	SCOP2B (2022-06-29)
Y [auth b]	SCOP2B Superfamily	Translational proteins	8107626	3000811	SCOP2B (2022-06-29)
Z [auth c]	SCOP2B Superfamily	Ribosomal protein L4	8107624	3001146	SCOP2B (2022-06-29)
AA [auth d]	SCOP2B Superfamily	RL5-like	8107658	3001709	SCOP2B (2022-06-29)
C [auth 2]	SCOP2B Superfamily	Ribosomal protein L36	8107602	3001346	SCOP2B (2022-06-29)
FA [auth i]	SCOP2B Superfamily	Ribosomal protein L13	8107608	3001134	SCOP2B (2022-06-29)
GA [auth j]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8107662	3000433	SCOP2B (2022-06-29)
HA [auth k]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8107650	3001045	SCOP2B (2022-06-29)
IA [auth l]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8107596	3000884	SCOP2B (2022-06-29)
JA [auth m]	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8107666	3000995	SCOP2B (2022-06-29)
KA [auth n]	SCOP2B Superfamily	Translational machinery components	8107652	3000571	SCOP2B (2022-06-29)
LA [auth o]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8107604	3000334	SCOP2B (2022-06-29)
MA [auth p]	SCOP2B Superfamily	Ribosomal protein L20	8107632	3000563	SCOP2B (2022-06-29)
NA [auth q]	SCOP2B Superfamily	l21p-like	8107634	3002005	SCOP2B (2022-06-29)
QA [auth t]	SCOP2 Family	Ribosomal proteins L24p and L21e	8107659	4001752	SCOP2 (2022-06-29)
QA [auth t]	SCOP2 Superfamily	Translation proteins SH3-like KOW motif containing domain	8107660	3000334	SCOP2 (2022-06-29)
RA [auth u]	SCOP2B Superfamily	Ribosomal L27 protein-like	8107616	3000539	SCOP2B (2022-06-29)
VA [auth y]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8107612	3001320	SCOP2B (2022-06-29)
WA [auth z]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8107630	3001320	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8107598	3001473	SCOP2B (2022-06-29)
I [auth F]	SCOP2B Superfamily	Ribosomal protein S7	8107618	3000799	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 0]	Ribosomal_L34	e7piq01	A: extended segments	X: 50S ribosomal protein L34 (From Topology)	H: 50S ribosomal protein L34 (From Topology)	T: 50S ribosomal protein L34	F: Ribosomal_L34	ECOD (1.6)
J [auth G]	Ribosomal_S8_N	e7piqG1	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: Ribosomal_S8_N	ECOD (1.6)
J [auth G]	Ribosomal_S8_C	e7piqG2	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: Ribosomal_S8_C	ECOD (1.6)
K [auth H]	Ribosomal_S9	e7piqH1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S9	ECOD (1.6)
L [auth I]	Ribosomal_S10	e7piqI1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: Ribosomal_S10	ECOD (1.6)
M [auth J]	Ribosomal_S11	e7piqJ1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Ribosomal_S11	ECOD (1.6)
N [auth K]	Ribosom_S12_S23	e7piqK1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosom_S12_S23	ECOD (1.6)
O [auth L]	Ribosomal_S13_1	e7piqL1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: Ribosomal_S13_1	ECOD (1.6)
P [auth M]	Ribosomal_S14	e7piqM1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: Ribosomal_S14	ECOD (1.6)
Q [auth N]	Ribosomal_S15_1	e7piqN1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Ribosomal_S15_1	ECOD (1.6)
R [auth O]	Ribosomal_S16_1	e7piqO1	A: a+b two layers	X: Ribosomal protein S16 (From Topology)	H: Ribosomal protein S16 (From Topology)	T: Ribosomal protein S16	F: Ribosomal_S16_1	ECOD (1.6)
S [auth P]	Ribosomal_S17_1	e7piqP1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_S17_1	ECOD (1.6)
B [auth 1]	Ribosomal_L35p	e7piq11	A: a+b two layers	X: Ribosomal protein L35p (From Topology)	H: Ribosomal protein L35p (From Topology)	T: Ribosomal protein L35p	F: Ribosomal_L35p	ECOD (1.6)
T [auth Q]	Ribosomal_S18	e7piqQ1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Ribosomal_S18	ECOD (1.6)
U [auth R]	Ribosomal_S19	e7piqR1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: Ribosomal_S19	ECOD (1.6)
V [auth S]	Ribosomal_S20p	e7piqS1	A: alpha bundles	X: Spectrin repeat-like	H: Ribosomal protein S20 (From Topology)	T: Ribosomal protein S20	F: Ribosomal_S20p	ECOD (1.6)
W [auth T]	F_UNCLASSIFIED	e7piqT1	A: extended segments	X: 30S ribosomal protein S21 (From Topology)	H: 30S ribosomal protein S21 (From Topology)	T: 30S ribosomal protein S21	F: F_UNCLASSIFIED	ECOD (1.6)
X [auth a]	Ribosomal_L2_1	e7piqa1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_L2_1	ECOD (1.6)
X [auth a]	Ribosomal_L2_C	e7piqa2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L2_C	ECOD (1.6)
Y [auth b]	Ribosomal_L3	e7piqb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L3	ECOD (1.6)
Z [auth c]	Ribosomal_L4	e7piqc1	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: Ribosomal_L4	ECOD (1.6)
AA [auth d]	Ribosomal_L5_C	e7piqd1	A: a+b two layers	X: Ribosomal protein L5 (From Topology)	H: Ribosomal protein L5 (From Topology)	T: Ribosomal protein L5	F: Ribosomal_L5_C	ECOD (1.6)
BA [auth e]	Ribosomal_L6	e7piqe1	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: Ribosomal_L6	ECOD (1.6)
BA [auth e]	Ribosomal_L6_1	e7piqe2	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: Ribosomal_L6_1	ECOD (1.6)
CA [auth f]	Ribosomal_L9_N	e7piqf1	A: a+b two layers	X: L9 N-domain-like	H: L9 N-domain-like (From Topology)	T: L9 N-domain-like	F: Ribosomal_L9_N	ECOD (1.6)
CA [auth f]	Ribosomal_L9_C	e7piqf2	A: a+b two layers	X: Ribosomal protein L9 C-domain (From Topology)	H: Ribosomal protein L9 C-domain (From Topology)	T: Ribosomal protein L9 C-domain	F: Ribosomal_L9_C	ECOD (1.6)
C [auth 2]	Ribosomal_L36	e7piq21	A: few secondary structure elements	X: Ribosomal protein L36 (From Topology)	H: Ribosomal protein L36 (From Topology)	T: Ribosomal protein L36	F: Ribosomal_L36	ECOD (1.6)
DA [auth g]	Ribosomal_L10	e7piqg1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein L10-like (From Topology)	T: Ribosomal protein L10-like	F: Ribosomal_L10	ECOD (1.6)
EA [auth h]	Ribosomal_L11	e7piqh2	A: alpha arrays	X: HTH	H: HTH	T: Ribosomal protein L11, C-terminal domain	F: Ribosomal_L11	ECOD (1.6)
EA [auth h]	Ribosomal_L11_N	e7piqh1	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: Ribosomal protein L11/L12e N-terminal domain (From Topology)	T: Ribosomal protein L11/L12e N-terminal domain	F: Ribosomal_L11_N	ECOD (1.6)
FA [auth i]	Ribosomal_L13	e7piqi1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: Ribosomal_L13	ECOD (1.6)
GA [auth j]	Ribosomal_L14	e7piqj1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: Ribosomal_L14	ECOD (1.6)
HA [auth k]	Ribosomal_L27A	e7piqk1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: Ribosomal_L27A	ECOD (1.6)
IA [auth l]	Ribosomal_L16	e7piql1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal protein L10e	F: Ribosomal_L16	ECOD (1.6)
JA [auth m]	Ribosomal_L17_1	e7piqm1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Prokaryotic ribosomal protein L17 (From Topology)	T: Prokaryotic ribosomal protein L17	F: Ribosomal_L17_1	ECOD (1.6)
KA [auth n]	Ribosomal_L18p	e7piqn1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Ribosomal_L18p	ECOD (1.6)
LA [auth o]	Ribosomal_L19	e7piqo1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L19	ECOD (1.6)
MA [auth p]	Ribosomal_L20	e7piqp1	A: alpha arrays	X: PABP domain-like	H: Ribosomal protein L20 (From Topology)	T: Ribosomal protein L20	F: Ribosomal_L20	ECOD (1.6)
D [auth A]	Ribosomal_S2	e7piqA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: Ribosomal_S2	ECOD (1.6)
NA [auth q]	Ribosomal_L21p	e7piqq1	A: beta barrels	X: Ribosomal protein L21p (From Topology)	H: Ribosomal protein L21p (From Topology)	T: Ribosomal protein L21p	F: Ribosomal_L21p	ECOD (1.6)
PA [auth s]	Ribosomal_L23_2	e7piqs1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: Ribosomal_L23_2	ECOD (1.6)
QA [auth t]	ribosomal_L24_1	e7piqt1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: ribosomal_L24_1	ECOD (1.6)
RA [auth u]	Ribosomal_L27	e7piqu1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal L27 protein	F: Ribosomal_L27	ECOD (1.6)
SA [auth v]	Ribosomal_L28	e7piqv1	A: few secondary structure elements	X: Ribosomal protein bL28-related (From Homology)	H: Ribosomal protein bL28-related	T: Ribosomal protein L28	F: Ribosomal_L28	ECOD (1.6)
UA [auth x]	Ribosomal_L31	e7piqx1	A: few secondary structure elements	X: Ribosomal protein L31p (From Topology)	H: Ribosomal protein L31p (From Topology)	T: Ribosomal protein L31p	F: Ribosomal_L31	ECOD (1.6)
VA [auth y]	Ribosomal_L32p	e7piqy1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L32p	ECOD (1.6)
WA [auth z]	Ribosomal_L33	e7piqz1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L33	ECOD (1.6)
E [auth B]	Ribosomal_S3_C	e7piqB1	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: Ribosomal_S3_C	ECOD (1.6)
E [auth B]	KH_2_1	e7piqB2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: KH_2_1	ECOD (1.6)
F [auth C]	S4	e7piqC1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: S4	ECOD (1.6)
G [auth D]	Ribosomal_S5_C	e7piqD2	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S5_C	ECOD (1.6)
G [auth D]	Ribosomal_S5	e7piqD1	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: Ribosomal_S5	ECOD (1.6)
I [auth F]	Ribosomal_S7_1	e7piqF1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: Ribosomal_S7_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0]	PF00468	Ribosomal protein L34 (Ribosomal_L34)	Ribosomal protein L34	-	Family
J [auth G]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
K [auth H]	PF03946	Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)	Ribosomal protein L11, N-terminal domain	The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.	Domain
K [auth H]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
K [auth H]	PF00298	Ribosomal protein L11, RNA binding domain (Ribosomal_L11)	Ribosomal protein L11, RNA binding domain	-	Domain
L [auth I]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain
L [auth I]	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family
M [auth J]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain
M [auth J]	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
N [auth K]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	-	Family
N [auth K]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	-	Family
O [auth L]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e	-	Domain
P [auth M]	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family
P [auth M]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
Q [auth N]	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	-	Family
Q [auth N]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
R [auth O]	PF00886	Ribosomal protein S16 (Ribosomal_S16)	Ribosomal protein S16	-	Family
R [auth O]	PF01245	Ribosomal protein L19 (Ribosomal_L19)	Ribosomal protein L19	-	Family
S [auth P]	PF00453	Ribosomal protein L20 (Ribosomal_L20)	Ribosomal protein L20	-	Family
S [auth P]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
B [auth 1]	PF01632	Ribosomal protein L35 (Ribosomal_L35p)	Ribosomal protein L35	-	Family
T [auth Q]	PF01084	Ribosomal protein S18 (Ribosomal_S18)	Ribosomal protein S18	-	Family
T [auth Q]	PF00829	Ribosomal prokaryotic L21 protein (Ribosomal_L21p)	Ribosomal prokaryotic L21 protein	-	Family
U [auth R]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
U [auth R]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19	-	Domain
V [auth S]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
W [auth T]	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)	Ribosomal proteins 50S L24/mitochondrial 39S L24	-	Family
W [auth T]	PF00467	KOW motif (KOW)	KOW motif	-	Family
C [auth 2]	PF00444	Ribosomal protein L36 (Ribosomal_L36)	Ribosomal protein L36	-	Domain
D [auth A]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
D [auth A]	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
D [auth A]	PF00181	Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)	Ribosomal Proteins L2, RNA binding domain	-	Domain
E [auth B]	PF07650	KH domain (KH_2)	KH domain	-	Domain
E [auth B]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
E [auth B]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
F [auth C]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
F [auth C]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
F [auth C]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
G [auth D]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
G [auth D]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5	-	Domain
G [auth D]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
G [auth D]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain	-	Domain
H [auth E]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain
H [auth E]	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6	-	Domain
I [auth F]	PF01281	Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)	Ribosomal protein L9, N-terminal domain	-	Domain
I [auth F]	PF03948	Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)	Ribosomal protein L9, C-terminal domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0]	50S ribosomal protein L34	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
J [auth G]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
K [auth H]	30S ribosomal protein S9	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
L [auth I]	30S ribosomal protein S10	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
M [auth J]	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
N [auth K]	30S ribosomal protein S12	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome
O [auth L]	30S ribosomal protein S13	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
P [auth M]	30S ribosomal protein S14 type Z	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
Q [auth N]	30S ribosomal protein S15	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
R [auth O]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
S [auth P]	30S ribosomal protein S17	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
B [auth 1]	50S ribosomal protein L35	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
T [auth Q]	30S ribosomal protein S18	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
U [auth R]	30S ribosomal protein S19	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm
V [auth S]	30S ribosomal protein S20	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
W [auth T]	30S ribosomal protein S21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
X [auth a]	50S ribosomal protein L2	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
Y [auth b]	50S ribosomal protein L3	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
Z [auth c]	50S ribosomal protein L4	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	response to stimulus response to chemical response to antibiotic biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
AA [auth d]	50S ribosomal protein L5	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
BA [auth e]	50S ribosomal protein L6	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
CA [auth f]	50S ribosomal protein L9	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth 2]	50S ribosomal protein L36	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
DA [auth g]	50S ribosomal protein L10	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
EA [auth h]	50S ribosomal protein L11	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
FA [auth i]	50S ribosomal protein L13	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
GA [auth j]	50S ribosomal protein L14	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
HA [auth k]	50S ribosomal protein L15	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
IA [auth l]	50S ribosomal protein L16	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
JA [auth m]	50S ribosomal protein L17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
KA [auth n]	50S ribosomal protein L18	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
LA [auth o]	50S ribosomal protein L19	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
MA [auth p]	50S ribosomal protein L20	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
D [auth A]	30S ribosomal protein S2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome
NA [auth q]	50S ribosomal protein L21	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
OA [auth r]	50S ribosomal protein L22	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	response to stimulus response to chemical response to antibiotic biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
PA [auth s]	50S ribosomal protein L23	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
QA [auth t]	50S ribosomal protein L24	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
RA [auth u]	50S ribosomal protein L27	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
SA [auth v]	50S ribosomal protein L28	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
TA [auth w]	50S ribosomal protein L29	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
UA [auth x]	50S ribosomal protein L31	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
VA [auth y]	50S ribosomal protein L32	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
WA [auth z]	50S ribosomal protein L33 1	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
E [auth B]	30S ribosomal protein S3	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
XA [auth 3]	23S ribosomal RNA	-	-	-
YA [auth 4]	5S ribosomal RNA	-	-	-
ZA [auth 5]	16S ribosomal RNA	-	-	-
AB [auth 6], BB [auth 7]	tRNA-Phe	-	-	-
F [auth C]	30S ribosomal protein S4	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome
G [auth D]	30S ribosomal protein S5	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm
H [auth E]	30S ribosomal protein S6	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
I [auth F]	30S ribosomal protein S7	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure organelle ribonucleoprotein complex membraneless organelle ribosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
A [auth 0]	IPR000271	Large ribosomal subunit protein bL34	Family
J [auth G]	IPR000630	Small ribosomal subunit protein uS8	Family
J [auth G]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
J [auth G]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
K [auth H]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
K [auth H]	IPR023035	Small ribosomal subunit protein uS9, bacterial/plastid	Family
K [auth H]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
K [auth H]	IPR000754	Small ribosomal subunit protein uS9	Family
K [auth H]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
L [auth I]	IPR001848	Small ribosomal subunit protein uS10	Family
L [auth I]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
L [auth I]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
L [auth I]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
M [auth J]	IPR001971	Small ribosomal subunit protein uS11	Family
M [auth J]	IPR019981	Small ribosomal subunit protein uS11, bacterial-type	Family
M [auth J]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
M [auth J]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
N [auth K]	IPR006032	Small ribosomal subunit protein uS12	Family
N [auth K]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
N [auth K]	IPR005679	Ribosomal protein uS12, bacterial-type	Family
O [auth L]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
O [auth L]	IPR001892	Small ribosomal subunit protein uS13	Family
O [auth L]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
O [auth L]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
O [auth L]	IPR019980	Small ribosomal subunit protein uS13, bacterial-type	Family
P [auth M]	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
P [auth M]	IPR001209	Small ribosomal subunit protein uS14	Family
P [auth M]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
P [auth M]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
Q [auth N]	IPR005290	Small ribosomal subunit protein uS15, bacterial-type	Family
Q [auth N]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
Q [auth N]	IPR000589	Small ribosomal subunit protein uS15	Family
R [auth O]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
R [auth O]	IPR000307	Small ribosomal subunit protein bS16	Family
S [auth P]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
S [auth P]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
S [auth P]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
S [auth P]	IPR000266	Small ribosomal subunit protein uS17	Family
B [auth 1]	IPR021137	Large ribosomal subunit protein bL35-like	Family
B [auth 1]	IPR018265	Large ribosomal subunit protein bL35, conserved site	Conserved Site
B [auth 1]	IPR001706	Large ribosomal subunit protein bL35	Family
B [auth 1]	IPR037229	Large ribosomal subunit protein bL35 superfamily	Homologous Superfamily
T [auth Q]	IPR001648	Small ribosomal subunit protein bS18	Family
T [auth Q]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
T [auth Q]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
U [auth R]	IPR002222	Small ribosomal subunit protein uS19	Family
U [auth R]	IPR005732	Small ribosomal subunit protein uS19, bacterial-type	Family
U [auth R]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
U [auth R]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
V [auth S]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
V [auth S]	IPR002583	Small ribosomal subunit protein bS20	Family
W [auth T]	IPR001911	Small ribosomal subunit protein bS21	Family
X [auth a]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
X [auth a]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
X [auth a]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
X [auth a]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
X [auth a]	IPR005880	Large ribosomal subunit protein uL2, bacterial/organellar-type	Family
X [auth a]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
X [auth a]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
X [auth a]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
X [auth a]	IPR002171	Large ribosomal subunit protein uL2	Family
Y [auth b]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
Y [auth b]	IPR019927	Large ribosomal subunit protein uL3, bacterial/organelle-type	Family
Y [auth b]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
Y [auth b]	IPR000597	Large ribosomal subunit protein uL3	Family
Z [auth c]	IPR013005	Large ribosomal subunit protein uL4-like	Family
Z [auth c]	IPR002136	Large ribosomal subunit protein uL4	Family
Z [auth c]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
AA [auth d]	IPR020929	Large ribosomal subunit protein uL5, conserved site	Conserved Site
AA [auth d]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
AA [auth d]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
AA [auth d]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
AA [auth d]	IPR020930	Large ribosomal subunit protein uL5, bacterial-type	Family
AA [auth d]	IPR002132	Large ribosomal subunit protein uL5	Family
BA [auth e]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
BA [auth e]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
BA [auth e]	IPR000702	Large ribosomal subunit protein uL6-like	Family
BA [auth e]	IPR019906	Large ribosomal subunit protein uL6, bacterial-type	Family
BA [auth e]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
CA [auth f]	IPR009027	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Homologous Superfamily
CA [auth f]	IPR020594	Large ribosomal subunit protein bL9, bacteria/chloroplast	Family
CA [auth f]	IPR036935	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Homologous Superfamily
CA [auth f]	IPR036791	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Homologous Superfamily
CA [auth f]	IPR020069	Large ribosomal subunit protein bL9, C-terminal	Domain
CA [auth f]	IPR020070	Large ribosomal subunit protein bL9, N-terminal	Domain
CA [auth f]	IPR000244	Large ribosomal subunit protein bL9	Family
C [auth 2]	IPR000473	Large ribosomal subunit protein bL36	Family
C [auth 2]	IPR035977	Large ribosomal subunit protein bL36 superfamily	Homologous Superfamily
DA [auth g]	IPR043141	Large ribosomal subunit protein uL10-like domain superfamily	Homologous Superfamily
DA [auth g]	IPR001790	Large ribosomal subunit protein uL10	Family
DA [auth g]	IPR047865	Large ribosomal subunit protein uL10, bacterial type	Family
DA [auth g]	IPR022973	Large ribosomal subunit protein uL10, bacterial	Family
DA [auth g]	IPR002363	Large ribosomal subunit protein uL10, conserved site, bacteria	Conserved Site
EA [auth h]	IPR020785	Large ribosomal subunit protein uL11, conserved site	Conserved Site
EA [auth h]	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
EA [auth h]	IPR000911	Ribosomal protein uL11	Family
EA [auth h]	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
EA [auth h]	IPR006519	Large ribosomal subunit protein uL11, bacterial-type	Family
EA [auth h]	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
EA [auth h]	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
FA [auth i]	IPR023563	Large ribosomal subunit protein uL13, conserved site	Conserved Site
FA [auth i]	IPR005822	Large ribosomal subunit protein uL13	Family
FA [auth i]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
FA [auth i]	IPR005823	Large ribosomal subunit protein uL13, bacterial-type	Family
GA [auth j]	IPR005745	Large ribosomal subunit protein uL14, bacterial-type	Family
GA [auth j]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
GA [auth j]	IPR000218	Large ribosomal subunit protein uL14	Family
GA [auth j]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
HA [auth k]	IPR005749	Large ribosomal subunit protein uL15, bacterial-type	Family
HA [auth k]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
HA [auth k]	IPR030878	Large ribosomal subunit protein uL15	Family
HA [auth k]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
IA [auth l]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
IA [auth l]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
IA [auth l]	IPR000114	Large ribosomal subunit protein uL16, bacterial-type	Family
IA [auth l]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
IA [auth l]	IPR047873	Large ribosomal subunit protein uL16	Family
JA [auth m]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
JA [auth m]	IPR047859	Large ribosomal subunit protein bL17, conserved site	Conserved Site
JA [auth m]	IPR000456	Large ribosomal subunit protein bL17	Family
KA [auth n]	IPR005484	Large ribosomal subunit protein uL18	Family
KA [auth n]	IPR004389	Large ribosomal subunit protein uL18, bacterial-type	Family
LA [auth o]	IPR001857	Large ribosomal subunit protein bL19	Family
LA [auth o]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
LA [auth o]	IPR018257	Large ribosomal subunit protein bL19, conserved site	Conserved Site
LA [auth o]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
MA [auth p]	IPR049946	Large ribosomal subunit protein bL20, conserved site	Conserved Site
MA [auth p]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
MA [auth p]	IPR005813	Large ribosomal subunit protein bL20	Family
D [auth A]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
D [auth A]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
D [auth A]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
D [auth A]	IPR001865	Small ribosomal subunit protein uS2	Family
NA [auth q]	IPR028909	Large ribosomal subunit protein bL21-like	Family
NA [auth q]	IPR001787	Large ribosomal subunit protein bL21	Family
NA [auth q]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
NA [auth q]	IPR018258	Large ribosomal subunit protein bL21, conserved site	Conserved Site
OA [auth r]	IPR047867	Large ribosomal subunit protein uL22, bacterial/organelle-type	Family
OA [auth r]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
OA [auth r]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
OA [auth r]	IPR001063	Large ribosomal subunit protein uL22	Family
OA [auth r]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
PA [auth s]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
PA [auth s]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
PA [auth s]	IPR013025	Large ribosomal subunit protein uL23-like	Family
QA [auth t]	IPR003256	Large ribosomal subunit protein uL24	Family
QA [auth t]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
QA [auth t]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
QA [auth t]	IPR005824	KOW	Domain
QA [auth t]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
QA [auth t]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
RA [auth u]	IPR001684	Large ribosomal subunit protein bL27	Family
RA [auth u]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
SA [auth v]	IPR001383	Large ribosomal subunit protein bL28, bacterial-type	Family
SA [auth v]	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
SA [auth v]	IPR050096	Bacterial ribosomal protein bL28	Family
SA [auth v]	IPR026569	Large ribosomal subunit protein bL28	Family
SA [auth v]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
TA [auth w]	IPR050063	Universal ribosomal protein uL29	Family
TA [auth w]	IPR001854	Large ribosomal subunit protein uL29	Family
TA [auth w]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
TA [auth w]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
UA [auth x]	IPR002150	Large ribosomal subunit protein bL31 type A/B	Family
UA [auth x]	IPR027491	Large ribosomal subunit protein bL31 type A	Family
UA [auth x]	IPR042105	Large ribosomal subunit protein bL31 superfamily	Homologous Superfamily
UA [auth x]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
VA [auth y]	IPR002677	Large ribosomal subunit protein bL32	Family
VA [auth y]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
VA [auth y]	IPR044957	Large ribosomal subunit protein bL32, bacterial type	Family
WA [auth z]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
WA [auth z]	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
WA [auth z]	IPR001705	Large ribosomal subunit protein bL33	Family
WA [auth z]	IPR018264	Large ribosomal subunit protein bL33, conserved site	Conserved Site
E [auth B]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
E [auth B]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
E [auth B]	IPR004087	K Homology domain	Domain
E [auth B]	IPR004044	K Homology domain, type 2	Domain
E [auth B]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
E [auth B]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
E [auth B]	IPR005704	Small ribosomal subunit protein uS3, bacterial-type	Family
E [auth B]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
F [auth C]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
F [auth C]	IPR002942	RNA-binding S4 domain	Domain
F [auth C]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
F [auth C]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
F [auth C]	IPR005709	Small ribosomal subunit protein uS4, bacterial-type	Family
F [auth C]	IPR022801	Small ribosomal subunit protein uS4	Family
G [auth D]	IPR000851	Small ribosomal subunit protein uS5	Family
G [auth D]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
G [auth D]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
G [auth D]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
G [auth D]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
G [auth D]	IPR005712	Small ribosomal subunit protein uS5, bacterial-type	Family
G [auth D]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
H [auth E]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
H [auth E]	IPR000529	Small ribosomal subunit protein bS6	Family
H [auth E]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
H [auth E]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
H [auth E]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
I [auth F]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
I [auth F]	IPR000235	Small ribosomal subunit protein uS7	Family
I [auth F]	IPR005717	Small ribosomal subunit protein uS7, bacterial/organellar-type	Family
I [auth F]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
I [auth F]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain