7QIJ | pdb_00007qij

Complex of the Yersinia enterocolitica Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AA]	tRNA-synt_2d	e7qijAA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
B [auth BA]	tRNA-synt_2d	e7qijBA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
C [auth CA]	tRNA-synt_2d	e7qijCA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
D [auth DA]	tRNA-synt_2d	e7qijDA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
E [auth EA]	tRNA-synt_2d	e7qijEA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
F [auth FA]	tRNA-synt_2d	e7qijFA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
G [auth GA]	tRNA-synt_2d	e7qijGA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
H [auth HA]	tRNA-synt_2d	e7qijHA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
I [auth IA]	tRNA-synt_2d	e7qijIA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
J [auth JA]	tRNA-synt_2d	e7qijJA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
K [auth KA]	tRNA-synt_2d	e7qijKA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
L [auth LA]	tRNA-synt_2d	e7qijLA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
M [auth MA]	tRNA-synt_2d	e7qijMA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
N [auth NA]	tRNA-synt_2d	e7qijNA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
O [auth OA]	tRNA-synt_2d	e7qijOA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
P [auth PA]	tRNA-synt_2d	e7qijPA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
Q [auth QA]	tRNA-synt_2d	e7qijQA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
R [auth RA]	tRNA-synt_2d	e7qijRA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
BA [auth GC]	tRNA-synt_2d	e7qijGC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
BB [auth QC]	tRNA-synt_2d	e7qijQC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
DA [auth LC]	tRNA-synt_2d	e7qijLC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
FA [auth NC]	tRNA-synt_2d	e7qijNC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
HA [auth OC]	tRNA-synt_2d	e7qijOC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
JA [auth PC]	tRNA-synt_2d	e7qijPC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
LA [auth EC]	tRNA-synt_2d	e7qijEC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
NA [auth FC]	tRNA-synt_2d	e7qijFC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
PA [auth HC]	tRNA-synt_2d	e7qijHC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
RA [auth IC]	tRNA-synt_2d	e7qijIC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
T [auth CC]	tRNA-synt_2d	e7qijCC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
TA [auth AC]	tRNA-synt_2d	e7qijAC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
V [auth JC]	tRNA-synt_2d	e7qijJC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
VA [auth BC]	tRNA-synt_2d	e7qijBC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
X [auth KC]	tRNA-synt_2d	e7qijKC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
XA [auth DC]	tRNA-synt_2d	e7qijDC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
Z [auth RC]	tRNA-synt_2d	e7qijRC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)
ZA [auth MC]	tRNA-synt_2d	e7qijMC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: tRNA-synt_2d	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	Low calcium response locus protein D	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], IA [auth PB], KA [auth EB], MA [auth FB], OA [auth HB], QA [auth IB], S [auth CB], SA [auth AB], U [auth JB], UA [auth BB], W [auth KB], WA [auth DB], Y [auth RB], YA [auth MB]	Yop proteins translocation protein X	-	-	cellular anatomical structure extracellular region
BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], JA [auth PC], LA [auth EC], NA [auth FC], PA [auth HC], RA [auth IC], T [auth CC], TA [auth AC], V [auth JC], VA [auth BC], X [auth KC], XA [auth DC], Z [auth RC], ZA [auth MC]	Chaperone protein YscY	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR042194	FHIPEP, domain 1	Homologous Superfamily
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR042196	FHIPEP, domain 4	Homologous Superfamily
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR001712	Type III secretion system FHIPEP	Family
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR042193	FHIPEP, domain 3	Homologous Superfamily
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR025505	FHIPEP conserved site	Conserved Site
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR006302	Type III secretion protein HrcV	Family
AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], IA [auth PB], KA [auth EB], MA [auth FB], OA [auth HB], QA [auth IB], S [auth CB], SA [auth AB], U [auth JB], UA [auth BB], W [auth KB], WA [auth DB], Y [auth RB], YA [auth MB]	IPR012672	Type III secretion system YscX	Family
BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], JA [auth PC], LA [auth EC], NA [auth FC], PA [auth HC], RA [auth IC], T [auth CC], TA [auth AC], V [auth JC], VA [auth BC], X [auth KC], XA [auth DC], Z [auth RC], ZA [auth MC]	IPR016684	Type III secretion system chaperone, YscY	Family
BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], JA [auth PC], LA [auth EC], NA [auth FC], PA [auth HC], RA [auth IC], T [auth CC], TA [auth AC], V [auth JC], VA [auth BC], X [auth KC], XA [auth DC], Z [auth RC], ZA [auth MC]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA] A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.