7R6K | pdb_00007r6k

State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth i]	SCOP2B Superfamily	Ribosomal protein L36e	8053115	3002161	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth N]	Ribosomal_L30	e7r6kN1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ribosomal_L30	ECOD (develop294)
M [auth q]	Ribosomal_L30	e7r6kq1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ribosomal_L30	ECOD (develop294)
K [auth l]	Ribosomal_L30	e7r6kl1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ribosomal_L30	ECOD (develop294)
J [auth i]	Ribosomal_L30	e7r6ki1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ribosomal_L30	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth I]	PF03914	CBF/Mak21 family (CBF)	CBF/Mak21 family	-	Repeat
F [auth I]	PF07540	Nucleolar complex-associated protein (NOC3p)	Nucleolar complex-associated protein	-	Family
C [auth 8]	PF03715	Noc2p family (Noc2)	Noc2p family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth g]	60S ribosomal protein L34-A	structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit preribosome preribosome, large subunit precursor
H [auth N]	60S ribosomal protein L15-A	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization cytosolic large ribosomal subunit assembly membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization cellular component assembly protein-RNA complex organization cytosolic ribosome assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly RNA metabolic process rRNA processing nucleobase-containing compound biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing rRNA metabolic process maturation of LSU-rRNA	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
G [auth J]	rRNA-processing protein EBP2	RNA binding binding nucleic acid binding mRNA binding identical protein binding protein binding	ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process cellular component organization nuclear division organelle organization organelle fission ribosomal large subunit biogenesis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen nuclear periphery preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor
F [auth I]	Nucleolar complex-associated protein 3	chromatin binding binding	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis ribosomal large subunit biogenesis cell division pre-replicative complex assembly nuclear DNA replication cell cycle DNA replication cellular component organization protein-DNA complex organization cellular component assembly protein-containing complex assembly cell cycle cell cycle process pre-replicative complex assembly involved in nuclear cell cycle DNA replication protein-containing complex organization pre-replicative complex assembly involved in cell cycle DNA replication protein-DNA complex assembly RNA metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA processing rRNA metabolic process	membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle preribosome, large subunit precursor intracellular organelle Noc2p-Noc3p complex cellular anatomical structure organelle ribonucleoprotein complex Noc complex membrane-bounded organelle protein-containing complex preribosome intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle preribosome, large subunit precursor intracellular organelle Noc2p-Noc3p complex cellular anatomical structure organelle ribonucleoprotein complex Noc complex membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen protein-DNA complex pre-replicative complex nucleoplasm nuclear pre-replicative complex
E [auth G]	60S ribosomal protein L8-A	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing nucleobase-containing compound biosynthetic process ribosomal large subunit biogenesis nucleic acid metabolic process cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process maturation of LSU-rRNA	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
D [auth A]	Ribosome biogenesis protein BRX1	RNA binding rRNA primary transcript binding binding rRNA binding nucleic acid binding 5S rRNA binding	rRNA 5'-end processing ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing RNA biosynthetic process nucleobase-containing compound metabolic process cellular component biogenesis nucleic acid biosynthetic process ribosome biogenesis RNA processing cellular component organization or biogenesis rRNA metabolic process maturation of 5.8S rRNA exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rRNA 5'-end processing ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing RNA biosynthetic process nucleobase-containing compound metabolic process cellular component biogenesis nucleic acid biosynthetic process ribosome biogenesis RNA processing cellular component organization or biogenesis rRNA metabolic process maturation of 5.8S rRNA exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process RNA 5'-end processing metabolic process cellular process macromolecule metabolic process organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribosome assembly endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor
C [auth 8]	Nucleolar complex protein 2	RNA binding binding nucleic acid binding mRNA binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal large subunit biogenesis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex preribosome nucleus nuclear protein-containing complex preribosome, large subunit precursor Noc2p-Noc3p complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex preribosome nucleus nuclear protein-containing complex preribosome, large subunit precursor Noc2p-Noc3p complex ribonucleoprotein complex Noc complex membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen 90S preribosome Noc1p-Noc2p complex nucleoplasm
B [auth 7]	60S ribosomal subunit assembly/export protein LOC1	RNA binding binding nucleic acid binding mRNA binding rRNA binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding RNA folding chaperone RNA binding binding nucleic acid binding mRNA binding rRNA binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding RNA folding chaperone RNA strand annealing activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid single-stranded RNA binding annealing activity macromolecular conformation isomerase activity catalytic activity	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process translation regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process localization macromolecule localization intracellular mRNA localization RNA localization ribosomal large subunit biogenesis RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization establishment of RNA localization nucleobase-containing compound transport establishment of organelle localization cellular localization nucleocytoplasmic transport nuclear transport ribosomal subunit export from nucleus ribosomal large subunit export from nucleus intracellular transport organelle localization establishment of localization in cell nuclear export ribosome localization endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rRNA 5'-end processing endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) RNA 5'-end processing	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex protein folding chaperone complex intracellular protein-containing complex preribosome ribonucleoprotein complex preribosome, large subunit precursor cytoplasm
P [auth 5]	RRP17 isoform 1	5'-3' RNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity preribosome binding ribonucleoprotein complex binding 5'-3' RNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity preribosome binding ribonucleoprotein complex binding protein-containing complex binding binding RNA binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process rRNA 5'-end processing generation of mature 5'-end of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) RNA 5'-end processing maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen nuclear periphery cytoplasm
O [auth w]	27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase	RNA methyltransferase activity O-methyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity rRNA (guanosine-2'-O-)-methyltransferase activity methyltransferase activity catalytic activity rRNA (guanine) methyltransferase activity RNA 2'-O-methyltransferase activity RNA methyltransferase activity O-methyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity rRNA (guanosine-2'-O-)-methyltransferase activity methyltransferase activity catalytic activity rRNA (guanine) methyltransferase activity RNA 2'-O-methyltransferase activity rRNA (uridine) methyltransferase activity rRNA (uridine-2'-O-)-methyltransferase activity	maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process ribosomal large subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA rRNA methylation rRNA modification macromolecule methylation RNA modification methylation macromolecule modification RNA methylation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor
N [auth r]	Ribosome biogenesis protein NSA2	-	maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process ribosomal large subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor
M [auth q]	25S rRNA (cytosine(2870)-C(5))-methyltransferase	RNA methyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity C-methyltransferase activity methyltransferase activity catalytic activity rRNA (cytosine) methyltransferase activity rRNA (cytosine-C5-)-methyltransferase activity RNA binding RNA methyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity C-methyltransferase activity methyltransferase activity catalytic activity rRNA (cytosine) methyltransferase activity rRNA (cytosine-C5-)-methyltransferase activity RNA binding binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly cellular process cellular component organization or biogenesis ribosome assembly RNA metabolic process rRNA processing nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process macromolecule metabolic process maturation of LSU-rRNA rRNA methylation rRNA modification macromolecule methylation RNA modification methylation macromolecule modification rRNA base methylation RNA methylation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor nucleoplasm
L [auth m]	Ribosome biogenesis protein ERB1	DNA binding binding nucleic acid binding RNA binding rRNA binding large ribosomal subunit rRNA binding ribonucleoprotein complex binding protein-containing complex binding	maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process ribosomal large subunit biogenesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor nucleoplasm nuclear protein-containing complex 90S preribosome PeBoW complex
K [auth l]	60S ribosome subunit biogenesis protein NIP7	RNA binding binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly assembly of large subunit precursor of preribosome protein-containing complex assembly ribosomal large subunit assembly cellular process cellular component organization or biogenesis ribosome assembly RNA metabolic process rRNA processing nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process macromolecule metabolic process maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor cytoplasm
J [auth i]	60S ribosomal protein L36-A	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization cytosolic large ribosomal subunit assembly membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization cellular component assembly protein-RNA complex organization cytosolic ribosome assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly RNA metabolic process rRNA processing nucleobase-containing compound biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing rRNA metabolic process maturation of LSU-rRNA	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
A [auth 1]	25S rRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth g]	IPR008195	Large ribosomal subunit protein eL34	Family
I [auth g]	IPR038562	Large ribosomal subunit protein eL34, C-terminal domain superfamily	Homologous Superfamily
I [auth g]	IPR018065	Large ribosomal subunit protein eL34, conserved site	Conserved Site
H [auth N]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
H [auth N]	IPR020925	Large ribosomal subunit protein eL15, conserved site	Conserved Site
H [auth N]	IPR024794	Large ribosomal subunit protein eL15 core domain superfamily	Homologous Superfamily
H [auth N]	IPR000439	Large ribosomal subunit protein eL15	Family
G [auth J]	IPR008610	Eukaryotic rRNA processing	Family
F [auth I]	IPR016024	Armadillo-type fold	Homologous Superfamily
F [auth I]	IPR016903	Nucleolar complex-associated protein 3	Family
F [auth I]	IPR011501	Nucleolar complex-associated protein 3, N-terminal	Domain
F [auth I]	IPR005612	CCAAT-binding factor	Domain
E [auth G]	IPR050257	Large ribosomal subunit protein eL8/uL1-like	Family
E [auth G]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
E [auth G]	IPR004037	Large ribosomal subunit protein eL8-like, conserved site	Conserved Site
E [auth G]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
E [auth G]	IPR018492	Ribosomal protein eL8/Nhp2 family	Family
E [auth G]	IPR001921	Large ribosomal subunit protein eL8, eukaryota	Family
D [auth A]	IPR026532	Ribosome biogenesis protein BRX1	Family
D [auth A]	IPR007109	Brix domain	Domain
C [auth 8]	IPR005343	Nucleolar complex protein 2	Family
B [auth 7]	IPR037650	60S ribosomal subunit assembly/export protein Loc1	Family
P [auth 5]	IPR019186	Nucleolar protein 12	Family
O [auth w]	IPR024576	Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381	Domain
O [auth w]	IPR012920	Ribosomal RNA methyltransferase, SPB1-like, C-terminal	Domain
O [auth w]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
O [auth w]	IPR002877	Ribosomal RNA methyltransferase, FtsJ domain	Domain
O [auth w]	IPR015507	Ribosomal RNA large subunit methyltransferase E	Family
O [auth w]	IPR028589	AdoMet-dependent rRNA methyltransferase SPB1-like	Family
O [auth w]	IPR050082	Ribosomal RNA large subunit methyltransferase RlmE	Family
N [auth r]	IPR039411	Ribosomal biogenesis NSA2 family	Family
N [auth r]	IPR022309	Ribosomal protein eS8/ribosomal biogenesis NSA2	Family
M [auth q]	IPR018314	RsmB/NOL1/NOP2-like, conserved site	Conserved Site
M [auth q]	IPR001678	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Domain
M [auth q]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
M [auth q]	IPR023267	RNA (C5-cytosine) methyltransferase	Family
M [auth q]	IPR011023	Nop2p	Domain
M [auth q]	IPR023273	RNA (C5-cytosine) methyltransferase, NOP2	Family
M [auth q]	IPR049560	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Domain
L [auth m]	IPR019775	WD40 repeat, conserved site	Conserved Site
L [auth m]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
L [auth m]	IPR028598	WD repeat BOP1/Erb1	Family
L [auth m]	IPR001680	WD40 repeat	Repeat
L [auth m]	IPR012953	BOP1, N-terminal domain	Domain
L [auth m]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
K [auth l]	IPR015947	PUA-like superfamily	Homologous Superfamily
K [auth l]	IPR005155	UPF0113, PUA domain	Domain
K [auth l]	IPR016686	Ribosome biogenesis factor, NIP7	Family
K [auth l]	IPR036974	PUA domain superfamily	Homologous Superfamily
K [auth l]	IPR040598	60S ribosome subunit biogenesis protein NIP7, pre-PUA domain	Domain
K [auth l]	IPR002478	PUA domain	Domain
K [auth l]	IPR055359	60S ribosome subunit biogenesis protein Nip7, pre-PUA domain, eukaryotes	Domain
J [auth i]	IPR000509	Large ribosomal subunit protein eL36	Family
J [auth i]	IPR038097	Large ribosomal subunit protein eL36 domain superfamily	Homologous Superfamily